Contig 001653:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004H03Sequence583001653 (10)ref|XP_011091261.1|5e-72PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]238024311
JMFF009K15Sequence580001653 (10)ref|XP_011091261.1|2e-75PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]726013850 (9)
JMFF014C05Sequence585001653 (10)ref|XP_004247759.1|4e-61PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Solanum lycopersicum]489013850 (9)
JMFF015M14Sequence583001653 (10)ref|XP_011091261.1|2e-74PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]701013850 (9)
JMFF018I11Sequence586001653 (10)ref|XP_011091261.1|2e-75PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]722013850 (9)
JMFF019A16Sequence583001653 (10)ref|XP_011091261.1|2e-74PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]640013850 (9)
JMFF031L06Sequence605001653 (10)ref|XP_011091261.1|4e-80PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]655013850 (9)
JMFF031N15Sequence195001653 (10)725013850 (9)
JMFF049J21Sequence629001653 (10)ref|XP_011091261.1|5e-87PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]625013850 (9)
JMSF028O24Sequence667001653 (10)ref|XP_011091262.1|2e-96PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Sesamum i667013850 (9)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028O24+ AAATCAT
                      ____________________________________________________________
consensus AAATCAT
 
. : . : . : . : . : . :
JMFF049J21+ ACTGCATCCTCAGAATCAAATGAAATGAAACCAA
JMSF028O24+ GGAAGGTCTTATGTAAAACCCTATCTACTGCATCCTCAGAATCAAATGAAATGAAACCAA
JMFF031L06+ AACCAA
                      ____________________________________________________________
consensus GGAAGGTCTTATGTAAAACCCTATCTACTGCATCCTCAGAATCAAATGAAATGAAACCAA
 
. : . : . : . : . : . :
JMFF049J21+ ACCCACGTGGTCGGTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMSF028O24+ ACCCACGTGGTCGGTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF031L06+ ACCCACGTGGTCGGTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF019A16+ GGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF015M14+ GGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF009K15+ GTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF004H03+ GGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF014C05+ TGGTCTGTNGATCATACATAATTACAACATCAGTTACATTACCAT
JMFF018I11+ GTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
                      ____________________________________________________________
consensus ACCCACGTGGTCGGTTGGTCTGTTGATCATACATAATTACAACATCAGTTACATTACCAT
 
. : . : . : . : . : . :
JMFF049J21+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMSF028O24+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF031L06+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF019A16+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF015M14+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF009K15+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF004H03+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF014C05+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
JMFF018I11+ AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
                      ____________________________________________________________
consensus AAGTTTCAAAATACATCCGGAAGCCATCCTCATTCAGAGTAGGAGGTAATCCCCCAACAA
 
. : . : . : . : . : . :
JMFF049J21+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMSF028O24+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF031L06+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF019A16+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF015M14+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF009K15+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF004H03+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
JMFF014C05+ ATATTTTCTTGGTCCTGGTACTACCACCACCACCCTCCAAGACTTCTGCCACTATTGGGA
JMFF018I11+ ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
                      ____________________________________________________________
consensus ATATTTTCTTGGTCCTGGTACTACCACCACCA-CCTCCAAGACTTCTGCCACTATTGGGA
 
. : . : . : . : . : . :
JMFF049J21+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMSF028O24+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF031L06+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF019A16+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF015M14+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF009K15+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF004H03+ TTCCCAGTTTTTGAGCCCAGTTGTTCCCCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF014C05+ TTCCCAGTTTTTGAGCCCAGTTGTTCCCCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
JMFF018I11+ TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
                      ____________________________________________________________
consensus TTCCCAGTTTTTGAGCCCTGTTGTTCCTCTCTAGATAAGGCCCTTTTGGCCTCAACCGTA
 
. : . : . : . : . : . :
JMFF049J21+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMSF028O24+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF031L06+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF019A16+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF015M14+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF009K15+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF004H03+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF014C05+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
JMFF018I11+ CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
                      ____________________________________________________________
consensus CGGCCATCAATGGTGTGCCTATCCTGGAGCACGGTATCAAGAACACTCGGATCTGCAAAC
 
. : . : . : . : . : . :
JMFF049J21+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMSF028O24+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF031L06+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF019A16+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF015M14+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF009K15+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF004H03+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF014C05+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
JMFF018I11+ ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
                      ____________________________________________________________
consensus ACAACGAAGCCAAAGCCTCTGGGCTTCCCGGAGATTTTGTCTCTCATAACAACAGTCTGC
 
. : . : . : . : . : . :
JMFF049J21+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMSF028O24+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF031L06+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF019A16+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF015M14+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF009K15+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF004H03+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF014C05+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
JMFF031N15+ GTCTCCCAAGAA
JMFF018I11+ ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
                      ____________________________________________________________
consensus ATAATCTCACCGTAGCTCTGGAAATACTCCCTCAGTTTATCTTCATTTGTCTCCCAAGAA
 
. : . : . : . : . : . :
JMFF049J21+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMSF028O24+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF031L06+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF019A16+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF015M14+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF009K15+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF004H03+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF014C05+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF031N15+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
JMFF018I11+ ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
                      ____________________________________________________________
consensus ATCCCACCGATGAAAAGCTTGCCTTGATCTGAGTCCATTCTCCTTCTTCTCTCTGCACCC
 
. : . : . : . : . : . :
JMFF049J21+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMSF028O24+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF031L06+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF019A16+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF015M14+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF009K15+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF004H03+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF014C05+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF031N15+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
JMFF018I11+ TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
                      ____________________________________________________________
consensus TCTATTCTCTCTCTACGAATCTATGGTGTAAGTATAGGCGTTAACCGAATATATATCTCG
 
. : . : . : . : . : . :
JMFF049J21+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGA
JMSF028O24+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGA
JMFF031L06+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF019A16+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF015M14+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF009K15+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGC
JMFF004H03+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF014C05+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF031N15+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
JMFF018I11+ ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC
                      ____________________________________________________________
consensus ATGCTGGTTCGGGTCTGTCTGAAGACAGAGAGAAAGAGAGAGAGGAGAGGAGGCGAAGAC