Contig 001644:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017F18Sequence603001644 (2)gb|AFS33109.1|2e-40heat stress transcription factor A2 [Capsicum annuum]795014838gb|AFS33109.1|2e-70heat stress transcription factor A2 [Capsicum annuum]
JMFS151A09Sequence626001644 (2)gb|AFS33109.1|3e-40heat stress transcription factor A2 [Capsicum annuum]

Alignment

This contig is upended


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JMFS151A09+                 TTCATCAGTTTAGCAAAAGAACCACCTATCATTTCTACTNTGCAGGAATCTAAC
                      ____________________________________________________________
consensus                   TTCATCAGTTTAGCAAAAGAACCACCTATCATTTCTACTNTGCAGGAATCTAAC
 
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JMFS151A09+           TAGACAACATAGTACTGGAAGATGATAATGCCAACCACAATTAAGATCAGGAAGAGAGTC
                      ____________________________________________________________
consensus             TAGACAACATAGTACTGGAAGATGATAATGCCAACCACAATTAAGATCAGGAAGAGAGTC
 
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JMFS151A09+           AGCATTCTTATCTGAAGATACTTAACCGAAAACAGACGAAATTGCTGAAATTAAACTAAT
                      ____________________________________________________________
consensus             AGCATTCTTATCTGAAGATACTTAACCGAAAACAGACGAAATTGCTGAAATTAAACTAAT
 
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JMFS151A09+           CAGACAAATAAGCAGCAACCCAAACTAAAGCCGAACAAAATTCAGACAGGGAATAAGATT
                      ____________________________________________________________
consensus             CAGACAAATAAGCAGCAACCCAAACTAAAGCCGAACAAAATTCAGACAGGGAATAAGATT
 
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JMFS151A09+           GAATTATGAAAAAGGGGGAATTGAAATAAAATGGGTACTCACATAAGTATTAAGCTGGCG
JMFF017F18+                                                     ATAAGTATTAAGCTGGCG
                      ____________________________________________________________
consensus             GAATTATGAAAAAGGGGGAATTGAAATAAAATGGGTACTCACATAAGTATTAAGCTGGCG
 
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JMFS151A09+           GATGAAGCTGGAGAAATTACTGTGCTTGAAATACCTAGGAAGGAGGGTTGTGGAGAACTG
JMFF017F18+           GATGAAGCTGGAGAAATTACTGTGCTTGAAATACCTAGGAAGGAGGGTTGTGGAGAACTG
                      ____________________________________________________________
consensus             GATGAAGCTGGAGAAATTACTGTGCTTGAAATACCTAGGAAGGAGGGTTGTGGAGAACTG
 
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JMFS151A09+           GTGAGAGTCCCAAACGATGAAGCTGTTCCTCGCCGCACTCCAAGAAATGACCTCGTCAGT
JMFF017F18+           GTGAGAGTCCCAAACGATGAAGCTGTTCCTCGCCGCACTCCAAGAAATGACCTCGTCAGT
                      ____________________________________________________________
consensus             GTGAGAGTCCCAAACGATGAAGCTGTTCCTCGCCGCACTCCAAGAAATGACCTCGTCAGT
 
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JMFS151A09+           GGAAGGGTCTTCTACCATATCATACGTTTTCGACAAGAACGGAGGCGGACCCACTTCGTG
JMFF017F18+           GGAAGGGTCTTCTACCATATCATACGTTTTCGACAAGAACGGAGGCGGACCCACTTCGTG
                      ____________________________________________________________
consensus             GGAAGGGTCTTCTACCATATCATACGTTTTCGACAAGAACGGAGGCGGACCCACTTCGTG
 
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JMFS151A09+           CAGCCCTTCCATCGGCGCCGGCGTCTCTTCTTCAAGCTTGACTGTCACTCTGTCATCCAT
JMFF017F18+           CAGCCCTTCCATCGGCGCCGGCGTCTCTTCTTCAAGCTTGACTGTCACTCTGTCATCCAT
                      ____________________________________________________________
consensus             CAGCCCTTCCATCGGCGCCGGCGTCTCTTCTTCAAGCTTGACTGTCACTCTGTCATCCAT
 
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JMFS151A09+           TTTTGCTCCAAATAGCTAGATTCTAGAATTAAGAGTGGGTCAGTGACTTGGAATTTCGGG
JMFF017F18+           TTTTGCTCCAAATAGCTAGATTCTAGAATTAAGAGTGGGTCAGTGACTTGGAATTTCGGG
                      ____________________________________________________________
consensus             TTTTGCTCCAAATAGCTAGATTCTAGAATTAAGAGTGGGTCAGTGACTTGGAATTTCGGG
 
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JMFS151A09+           CTGTTTAAGCTATTTATGGAGATTTCGGGCTG                            
JMFF017F18+           CTGTTTAAGCTATTTATGGAGATTTCGGGCTGTTTAAGGAAAGGGTTTTTTGCTATTTAT
                      ____________________________________________________________
consensus             CTGTTTAAGCTATTTATGGAGATTTCGGGCTGTTTAAGGAAAGGGTTTTTTGCTATTTAT