Contig 001628:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N10Sequence554001628 (3)ref|XP_010269462.1|1e-32PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Nelumb718015909emb|CDP19998.1|7e-63unnamed protein product [Coffea canephora]
JMFS001H06Sequence505001628 (3)ref|XP_009589679.1|1e-15PREDICTED: acyl-CoA-binding domain-containing protein 4 [Nicotiana tomentosifor
JMSF010M18Sequence269001628 (3)ref|XP_009589679.1|8e-17PREDICTED: acyl-CoA-binding domain-containing protein 4 [Nicotiana tomentosifor

Alignment

This contig is upended


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JMSF010M18+                                    CTTACAAGGTCCAATGGTTGCCTGCTGATAGAGTG
JMFS001H06+                                                        CCTGCTGATAGAGGG
JMFF014N10+                                                        CCTGCTGATAGAGGG
                      ____________________________________________________________
consensus                                      CTTACAAGGTCCAATGGTTGCCTGCTGATAGAGGG
 
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JMSF010M18+           CGTAGAGCAAGAGAGCGGCGTCATTTGAGAACTTGGAGGTGACGGCTTTACCGGAATCGG
JMFS001H06+           CGTAGAGAAGTAGCGCGACGTCATTTGAGAACTTTGAGATGACGCCTTTAGCGGAGTCGT
JMFF014N10+           CGTAGAGAAGTAGCGCGACGTCATTTGAGAACTTTGAGATGACGCCTTTAGCGGAGTCGT
                      ____________________________________________________________
consensus             CGTAGAGAAGTAGCGCGACGTCATTTGAGAACTTTGAGATGACGCCTTTAGCGGAGTCGT
 
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JMSF010M18+           CAGATCCATCGAAACCTACGTAAGCTGCCGCCGCATAGAACCGGTCCGGGTACGCGAGGC
JMFS001H06+           CAGATCCGTCGAAACCTACGTAGGCCGCTGCCGCATAGAACCTCTCCGGGTATGCGAGGC
JMFF014N10+           CAGATCCGTCGAAACCTACGTAGGCCGCTGCCGCATAGAACCTCTCCGGGTATGCGAGGC
                      ____________________________________________________________
consensus             CAGATCCGTCGAAACCTACGTAGGCCGCTGCCGCATAGAACCTCTCCGGGTATGCGAGGC
 
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JMSF010M18+           CAGAACTTACCCTCGCTATTGCTGCCATT                               
JMFS001H06+           CAGACCTCGCCCTCGCCATCGCTGCCATTCACCACCACCTCTCTCCCTCTTTTTTTCTCT
JMFF014N10+           CAGACCTCGCCCTCGCCATCGCTGCCATTCACCACCACCTCTCTCCCTCTTTTTTTCTCT
                      ____________________________________________________________
consensus             CAGACCTCGCCCTCGCCATCGCTGCCATTCACCACCACCTCTCTCCCTCTTTTTTTCTCT
 
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JMFS001H06+           CTCTCTCTATCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTATATATATGTATAT
JMFF014N10+           CTCTCTCTATCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTATATATATGTATAT
                      ____________________________________________________________
consensus             CTCTCTCTATCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTATATATATGTATAT
 
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JMFS001H06+           ATATATCTATATACACAGACCAGATGGCGAATATCTGAATCTGAGTTCAGCTCGGACGAC
JMFF014N10+           ATATATCTATATACACAGACCAGATGGCGAATATCTGAATCTGAGTTCAGCTCGGACGAC
                      ____________________________________________________________
consensus             ATATATCTATATACACAGACCAGATGGCGAATATCTGAATCTGAGTTCAGCTCGGACGAC
 
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JMFS001H06+           TCTCAGG                                                     
JMFF014N10+           TCTCAGGTATATGTGAATTTCAGTGAATTGTCTTCCTGAAGAAGAACGTCGATTTGAACT
                      ____________________________________________________________
consensus             TCTCAGGTATATGTGAATTTCAGTGAATTGTCTTCCTGAAGAAGAACGTCGATTTGAACT