Contig 001626:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF046E11+                            TTAGCCTCTTTCTTTGGTTCCTCTGTTTTGGGTTTTGCAGATT
                      ____________________________________________________________
consensus                              TTAGCCTCTTTCTTTGGTTCCTCTGTTTTGGGTTTTGCAGATT
 
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JMSF046E11+           CTTTNGGCTGTGCAGGCTTCTTTGACGGAGGGGGTGGAACCGATTCTGCTTGTTTAATCT
                      ____________________________________________________________
consensus             CTTTNGGCTGTGCAGGCTTCTTTGACGGAGGGGGTGGAACCGATTCTGCTTGTTTAATCT
 
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JMSF046E11+           CGCCCAATATCTTGCTGAAATTTGGCTGTTTCACCATAGTCCAGAAATATCTCTCCACAT
                      ____________________________________________________________
consensus             CGCCCAATATCTTGCTGAAATTTGGCTGTTTCACCATAGTCCAGAAATATCTCTCCACAT
 
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JMFF017M04+                                                         AATACTAAGGTTGC
JMSF046E11+           GGGGGAATTCTTTGGTAAAGGCCTTAGTCATGATCATCTTAAATCCAATACTAAGGTTGC
JMFF014L02+                                 CTTAGTCATGATCATCTTAAATCCAATACTAAGGTTGC
                      ____________________________________________________________
consensus             GGGGGAATTCTTTGGTAAAGGCCTTAGTCATGATCATCTTAAATCCAATACTAAGGTTGC
 
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JMFF017M04+           AAGTCATAATGATGTCAGCAAGCGTGACAAAGTGTCCAACCAAATAAGTGTTAGAGGCAA
JMSF046E11+           AAGTCATAATGATGTCAGCAAGCGTGACAAAGTGTCCAACCAAATAAGTGTTAGAGGCAA
JMFF014L02+           AAGTCATAATGATGTCAGCAAGCGTGACAAAGTGTCCAACCAAATAAGTGTTAGAGGCAA
                      ____________________________________________________________
consensus             AAGTCATAATGATGTCAGCAAGCGTGACAAAGTGTCCAACCAAATAAGTGTTAGAGGCAA
 
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JMFF017M04+           GGTGGGTGTTCAAGGCCTCTAGCGCTCTCTTCAGTGCAGCAACTGCAACCT-CCTCAGCC
JMSF046E11+           GGTGGGTGTTCAAGGCCTCTAGCGCTCTCTTCAGTGCAGCAACTGCAACCT-CCTCAGCC
JMFF014L02+           GGTGGGTGTTCAAGGCCTCTAGCGCTCTCTTCAGTGCAGCAACTGCAACCTCCCTCAGCC
                      ____________________________________________________________
consensus             GGTGGGTGTTCAAGGCCTCTAGCGCTCTCTTCAGTGCAGCAACTGCAACCT-CCTCAGCC
 
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JMFF017M04+           GGAGGCAAATGTACACCATGACCAATTCGGGGGTACAGCCACCGGGCAATATTTCCATCA
JMSF046E11+           GGAGGCAAATGTACACCATGACCAATTCGGGGGTACAGCCACCGGGCAATATTTCCATCA
JMFF014L02+           GGAGGCAAATGTACACCATGACCAATTCGGGGGTACAGCCACCGGGCAATATTTCCATCA
                      ____________________________________________________________
consensus             GGAGGCAAATGTACACCATGACCAATTCGGGGGTACAGCCACCGGGCAATATTTCCATCA
 
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JMFF017M04+           ATCTCAGTAGCTGAAAAATCATTCCATTGCTCAATATGGGCATATTCGATCAATGAAGAT
JMSF046E11+           ATCTCAGTAGCTGAAAAATGATTCCATTGCTCAATATGGGCATATTCGATCAATGAAGAT
JMFF014L02+           ATCTCAGTAGCTGAAAAATCATTCCATTGCTCAATATGGGCATATTCGATCAATGAAGAT
                      ____________________________________________________________
consensus             ATCTCAGTAGCTGAAAAATCATTCCATTGCTCAATATGGGCATATTCGATCAATGAAGAT
 
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JMFF017M04+           CCAAAAAGAGGATTGTCAGGCTTCAACTTAGCAACATAACGTGCAATGGCATTGCTCTCA
JMSF046E11+           CCAAAAAGAGGATTGTCAGGCTTCAACTTAGCAACATAACGTGCAATGGCATTGCTCTCA
JMFF014L02+           CCAAAAAGAGGATTGTCAGGCTTCAACTTAGCAACATAACGTGCAATGGCATTGCTCTCA
                      ____________________________________________________________
consensus             CCAAAAAGAGGATTGTCAGGCTTCAACTTAGCAACATAACGTGCAATGGCATTGCTCTCA
 
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JMFF017M04+           AATACTGGACCTTCAGGTGTTTCAAGCACAGGAGCCTTTCCAATTGGATTCATCTTAAGA
JMSF046E11+           AATACTGGACCTTCAGGTGTTTCAAGCACAGGAGCCTTTCCAATTGGATTCATCTTAAGA
JMFF014L02+           AATACTGGACCTTCAGGTGTTTCAAGCACAGGAGCCTTTCCAATTGGATTCATCTTAAGA
                      ____________________________________________________________
consensus             AATACTGGACCTTCAGGTGTTTCAAGCACAGGAGCCTTTCCAATTGGATTCATCTTAAGA
 
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JMFF017M04+           AACTCTGGAGTCTTGTTTGATACACCCATCTTGAAGTCCTTCGCCAATTCTACTTTAACA
JMSF046E11+           AACTCTGGAGTCTTGTTTGATACACCCATCTTGAAGTCCTTCGCCAATTCTACTTTAACA
JMFF014L02+           AACTCTGGAGTCTTGTTTGATACACCCATCTTGAAGTCCTTCGCCAATTCTACTTTAACA
                      ____________________________________________________________
consensus             AACTCTGGAGTCTTGTTTGATACACCCATCTTGAAGTCCTTCGCCAATTCTACTTTAACA
 
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JMFF017M04+           CCAGTGTATTCCGCAGCGATGAGTGCCTTGAATGCATTCTTGTTTATATTGGATGAATGC
JMSF046E11+           CCAGTGTATTCCGCAGCGATGAGTGCCTTGAATGCATTCTTGTTTATATTGGATGAATGC
JMFF014L02+           CCAGTGTATTCCGCAGCGATGAGTGCCTTGAATGCATTCTTGTTTATATTGGATGAATGC
                      ____________________________________________________________
consensus             CCAGTGTATTCCGCAGCGATGAGTGCCTTGAATGCATTCTTGTTTATATTGGATGAATGC
 
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JMFF017M04+           AGAATCAGAGCCATGGCTT                                         
JMSF046E11+           AGAATCAGAGCCATGGCTTGAGATTAGA                                
JMFF014L02+           AGAATCAGAGCCATGGCTTGAGATTAGAGAGAGGCCGCTGTGGATTCAGAAGGCCTATAC
                      ____________________________________________________________
consensus             AGAATCAGAGCCATGGCTTGAGATTAGAGAGAGGCCGCTGTGGATTCAGAAGGCCTATAC