Contig 001624:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009H01Sequence547001624 (2)ref|XP_003537244.1|4e-42PREDICTED: zinc finger CCCH domain-containing protein 21-like [Glycine max] gb|691008189 (4)gb|ABA81871.1|2e-34unknown [Solanum tuberosum]
JMFF014G01Sequence569001624 (2)ref|XP_003537244.1|4e-48PREDICTED: zinc finger CCCH domain-containing protein 21-like [Glycine max] gb|717008189 (4)gb|ABA81871.1|2e-35unknown [Solanum tuberosum]

Alignment

This contig is upended


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JMFF009H01+                                                                TTTACAC
JMFF014G01+                                          GAACGTTCAAATCGTGTGAGAATTTACAC
                      ____________________________________________________________
consensus                                            GAACGTTCAAATCGTGTGAGAATTTACAC
 
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JMFF009H01+           TTAAAACCCTTTGCACATTGCCCCACCTTGAAGAACTCACATAATATTGATTTTGGATCC
JMFF014G01+           TTAAAACCCTTTGCACATTGCCCCACCTTGAAGAACTCACATAATATTGATTTTGGATCC
                      ____________________________________________________________
consensus             TTAAAACCCTTTGCACATTGCCCCACCTTGAAGAACTCACATAATATTGATTTTGGATCC
 
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JMFF009H01+           ACACCAATTGGAACCTTCGGCTGACTAACAGCAACCTTAAACAAGTCATTGAGCTCCTTC
JMFF014G01+           ACACCAATTGGAACCTTCGGCTGACTAACAGCAACCTTAAACAAGTCATTGAGCTCCTTC
                      ____________________________________________________________
consensus             ACACCAATTGGAACCTTCGGCTGACTAACAGCAACCTTAAACAAGTCATTGAGCTCCTTC
 
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JMFF009H01+           TCTTTAGCCTTTTCTTCTTCTTTCTTTTTCTTGGCATCGAGTTTTTTGGGGTCAGGTTTA
JMFF014G01+           TCTTTAGCCTTTTCTTCTTCTTTCTTTTTCTTGGCATCGAGTTTTTTGGGGTCAGGTTTA
                      ____________________________________________________________
consensus             TCTTTAGCCTTTTCTTCTTCTTTCTTTTTCTTGGCATCGAGTTTTTTGGGGTCAGGTTTA
 
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JMFF009H01+           GGCTGGACGTTCTGTTTAAGGGATTGCACGTATTTCTGAACGTTTTTGGACTTGTTTTTG
JMFF014G01+           GGCTGGACGTTCTGTTTAAGGGATTGCACGTATTTCTGAACGTTTTTGGACTTGTTTTTG
                      ____________________________________________________________
consensus             GGCTGGACGTTCTGTTTAAGGGATTGCACGTATTTCTGAACGTTTTTGGACTTGTTTTTG
 
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JMFF009H01+           TTCTTGAGACCGAAGGTCTTGTCTTCGACAACCTTCTGCTTCTTCGCCAATTCGGCTTTC
JMFF014G01+           TTCTTGAGACCGAAGGTCTTGTCTTCGACAACCTTCTGCTTCTTCGCCAATTCGGCTTTC
                      ____________________________________________________________
consensus             TTCTTGAGACCGAAGGTCTTGTCTTCGACAACCTTCTGCTTCTTCGCCAATTCGGCTTTC
 
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JMFF009H01+           GATTGCTGCTGCTTCGGAGGCATCTCTGATTATCATGCAACTCTATCCCCGACCCAACTT
JMFF014G01+           GATTGCTGCTGCTTCGGAGGCATCTCTGATTATCATGCAACTCTATCCCCGACCCAACTT
                      ____________________________________________________________
consensus             GATTGCTGCTGCTTCGGAGGCATCTCTGATTATCATGCAACTCTATCCCCGACCCAACTT
 
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JMFF009H01+           CAATTCAATCTCCTCGGAGCTCTTATTCCCAATCGCAAATTCGCCTGACTATAGCTTATC
JMFF014G01+           CAATTCAATCTCCTCGGAGCTCTTATTCCCAATCGCAAATTCGCCTGACTATAGCTTATC
                      ____________________________________________________________
consensus             CAATTCAATCTCCTCGGAGCTCTTATTCCCAATCGCAAATTCGCCTGACTATAGCTTATC
 
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JMFF009H01+           CGACACCGATGTGCGGAGGCGTAGCGCGGCCGGCGGCGGAAAAGGATAACTCTGTGATGC
JMFF014G01+           CGACACCGATGTGCGGAGGCGTAGCGCGGCCGGCGGCGGAAAAGGATAACTCTGTGATGC
                      ____________________________________________________________
consensus             CGACACCGATGTGCGGAGGCGTAGCGCGGCCGGCGGCGGAAAAGGATAACTCTGTGATGC
 
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JMFF009H01+           GCCTGGGATCAAAAGAGAAGATGGTTTCCAGAAGGTGCGTCGAGAGTGAAATTACA    
JMFF014G01+           GCCTGGGATCAAAAGAGAAGATGGTTTCCAGAAGGTGCGTCGAGAGTGAAATTACAATGT
                      ____________________________________________________________
consensus             GCCTGGGATCAAAAGAGAAGATGGTTTCCAGAAGGTGCGTCGAGAGTGAAATTACAATGT