Contig 001622:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O18Sequence462001622 (3)ref|XP_002325525.2|7e-20hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo692008414 (5)ref|XP_010667408.1|5e-42PREDICTED: glucuronoxylan 4-O-methyltransferase 3-like [Beta vulgaris subsp. vu
JMFF025L22Sequence543001622 (3)ref|XP_002325525.2|1e-40hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo679008414 (5)ref|XP_007019817.1|8e-57UvrABC system protein C isoform 1 [Theobroma cacao] gb|EOY17042.1| UvrABC system
JMFF051J06Sequence567001622 (3)ref|XP_002325525.2|7e-41hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo460008414 (5)ref|XP_002526403.1|5e-50conserved hypothetical protein [Ricinus communis] gb|EEF35979.1| conserved hypot

Alignment

This contig is upended


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JMFF025L22+                                                                   TGAT
JMFF051J06+                                            AGGGTAATTGCCGGTGAATCTGGTGAT
                      ____________________________________________________________
consensus                                              AGGGTAATTGCCGGTGAATCTGGTGAT
 
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JMFF025L22+           CCAGGAGCGGTCCTCCTCCAGGAAGACGGTCCGGCCGCCGTGGTTGAGGGAGGTCCACAT
JMFF051J06+           CCAGGAGCGGTCCTCCTCCAGGAAGACGGTCCGGCCGCCGTGGTTGAGGGAGGTCCACAT
                      ____________________________________________________________
consensus             CCAGGAGCGGTCCTCCTCCAGGAAGACGGTCCGGCCGCCGTGGTTGAGGGAGGTCCACAT
 
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JMFF025L22+           GAGGCTGTCGTGGCCGAGGCCGAAGACCAAGAAGTTGCAGGGGGACTTCTTCGCCAGCAC
JMFF051J06+           GAGGCTGTCGTGGCCGAGGCCGAAGACCAAGAAATTGCAGGGGGACTTCTTCGCCAGCAC
JMFF013O18+                             GCCGAAGACCAAGAAGTTGCAGGGGGACTTCTTCGCCAGCAC
                      ____________________________________________________________
consensus             GAGGCTGTCGTGGCCGAGGCCGAAGACCAAGAAGTTGCAGGGGGACTTCTTCGCCAGCAC
 
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JMFF025L22+           CCTCATCGACACCGAGATTTCCTTCATCGTCTGCTGGGGAGTGATGTTGGTGGTCACGTA
JMFF051J06+           CCTCATCGACACCGAGATTTCCTTCATCGTCTGCTGGGGAGTGATGTTGGTGGTCACGTA
JMFF013O18+           CCTCATCGACACCGAGATTTCCTTCATCGTCTGCTGGGGAGTGATGTTGGTGGTCACGTA
                      ____________________________________________________________
consensus             CCTCATCGACACCGAGATTTCCTTCATCGTCTGCTGGGGAGTGATGTTGGTGGTCACGTA
 
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JMFF025L22+           GTGCACCAGCGCCTCCGCCAGCGACGGCGGGATCTTATCGCAGCTCTGGGTTCGGCCGGG
JMFF051J06+           GTGCACCAGCGCCTCCGCCAGCGACGGCGGGATCTTATCGCAGCTCTGGGTTCGGCCGGG
JMFF013O18+           GTGCACCAGCGCCTCCGCCAGCGACGGCGGGATCTTATCGCAGCTCTGGGTTCGGCCGGG
                      ____________________________________________________________
consensus             GTGCACCAGCGCCTCCGCCAGCGACGGCGGGATCTTATCGCAGCTCTGGGTTCGGCCGGG
 
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JMFF025L22+           AGGGCACGCCGCGGCTGTGGTTGTCGGTTCTTGATTCTCCGGCGGTTCTTGATTTTCCGA
JMFF051J06+           AGGGCACGCCGCGGCTGTGGTTGTCGGTTCTTGATTCTCCGGCGGTTCTTGATTTTCCGA
JMFF013O18+           AGGGCACGCCGCGGCTGTGGTTGTCGGTTCTTGATTCTCCGGCGGTTCTTGATTTTCCGA
                      ____________________________________________________________
consensus             AGGGCACGCCGCGGCTGTGGTTGTCGGTTCTTGATTCTCCGGCGGTTCTTGATTTTCCGA
 
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JMFF025L22+           GGGAGCTCGTGAGGAGGATGATGCATGGACTGACGGTGAAGAAGACGCCGCCGGCGAGAA
JMFF051J06+           GGGAGCTCGTGAGGAGGATGATGCATGGACTGACGGTGAAGAAGACGCCGCCGGCGAGAA
JMFF013O18+           GGGAGCTCGTGAGGAGGATGATGCATGGACTGACGGTGAAGAAGACGCCGCCGGCGAGAA
                      ____________________________________________________________
consensus             GGGAGCTCGTGAGGAGGATGATGCATGGACTGACGGTGAAGAAGACGCCGCCGGCGAGAA
 
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JMFF025L22+           AACTGATCTTGGGATTAGGAAGATCAAGAAAAGGAAGAAAAAGCAGATGAGAATGAGCTT
JMFF051J06+           AACTGATCTTGGGATTAGGAAGATCAAGAAAAGGAAGAAAAAGCAGATGAGAATGAGCTT
JMFF013O18+           AACTGATCTTGGGATTAGGAAGATCAAGAAAAGGAAGAAAAAGCAGATGAGAATGAGCTT
                      ____________________________________________________________
consensus             AACTGATCTTGGGATTAGGAAGATCAAGAAAAGGAAGAAAAAGCAGATGAGAATGAGCTT
 
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JMFF025L22+           GAAGTTGAGATTAATGGGGAATTGGGTTTTCGATCTCATTTTCTTCTGATCTTTCTCCCC
JMFF051J06+           GAAGTTGAGATTAATGGGGAATTGGGTTTTCGATCTCATTTTCTTCTGATCTTTCTCCCC
JMFF013O18+           GAAGTTGAGATTAATGGGGAATTGGGTTTTCGATCTCATTTTCTTCTGATCTTTCTCCCC
                      ____________________________________________________________
consensus             GAAGTTGAGATTAATGGGGAATTGGGTTTTCGATCTCATTTTCTTCTGATCTTTCTCCCC
 
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JMFF025L22+           CCAAAAAAAAAGATTTTGGTTTTTTTGGAAGGTTTTTTGAAGGAAGGAGAGAAAGAGAT 
JMFF051J06+           CCAAAAAAAAAGATTTTGGTTTTTTTGGAAGGTTTTTTGAAGGAAGGAGAGAAAGAGAT 
JMFF013O18+           CCAAAAAAAAAGATTTTGGTTTTTTTGGAAGGTTTTTTGAAGGAAGGAGAGAAAGAGATT
                      ____________________________________________________________
consensus             CCAAAAAAAAAGATTTTGGTTTTTTTGGAAGGTTTTTTGAAGGAAGGAGAGAAAGAGATT