Contig 001620:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013M06Sequence580001620 (5)emb|CDP18612.1|1e-42unnamed protein product [Coffea canephora]733021246emb|CAN68080.1|3e-52hypothetical protein VITISV_021805 [Vitis vinifera]
JMFF036I21Sequence643001620 (5)emb|CDP18612.1|9e-57unnamed protein product [Coffea canephora]613013769 (6)ref|XP_003612569.1|3e-27LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula]
JMSF024E19Sequence713001620 (5)emb|CDP18612.1|2e-67unnamed protein product [Coffea canephora]778013769 (6)emb|CAN68080.1|8e-72hypothetical protein VITISV_021805 [Vitis vinifera]
JMSF030B19Sequence641001620 (5)emb|CDP18612.1|7e-57unnamed protein product [Coffea canephora]717013769 (6)emb|CAN68080.1|4e-54hypothetical protein VITISV_021805 [Vitis vinifera]
JMSF041E15Sequence799001620 (5)emb|CDP18612.1|4e-83unnamed protein product [Coffea canephora]580013769 (6)ref|NP_001239788.1|2e-30LRR receptor-like serine/threonine-protein kinase FEI 1 precursor [Glycine max]

Alignment

This contig is upended


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JMSF041E15+                                    CANGACGACCATCAGAAGGTATTTGTCCAGTCAGG
                      ____________________________________________________________
consensus                                      CANGACGACCATCAGAAGGTATTTGTCCAGTCAGG
 
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JMSF024E19+                                                                 GGAACA
JMSF041E15+           AAATTATTTGACACATTGAATGATATGAGTTTGTCTAACTTCCCAAGTGATTGCGGAACA
                      ____________________________________________________________
consensus             AAATTATTTGACACATTGAATGATATGAGTTTGTCTAACTTCCCAAGTGATTGCGGAACA
 
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JMSF024E19+           TTTCCACTGAGAGAGTTACTAAAGAGATCCATATTTTCAAGATCAAGAAAGTTTCCCAGT
JMSF041E15+           TTTCCACTGAGAGAGTTACTAGAGAGATCCATATTTTCAAGATCAAGAAAGTTTCCCAGT
                      ____________________________________________________________
consensus             TTTCCACTGAGAGAGTTACTAGAGAGATCCATATTTTCAAGATCAAGAAAGTTTCCCAGT
 
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JMSF024E19+           TGATCAGGAATCAGTCCACTCAAATAATTACCCTGCAAAAACAAAGACTTCAGCATTGTA
JMFF036I21+           TGATCAGGAATCAGTCCACTCAAATAATTACCCTGCAAAAACAAAGACTTCAGCATTGTA
JMSF030B19+              TCAGGAATCAGTCCACTCAAATAATTACCCTGCAAAAACAAAGACTTCAGCATTGTA
JMSF041E15+           TGATCAGGAATCAGTCCACTCAAATAATTACCCTGCAAAAACAAAGACTTCAGCATTGTA
                      ____________________________________________________________
consensus             TGATCAGGAATCAGTCCACTCAAATAATTACCCTGCAAAAACAAAGACTTCAGCATTGTA
 
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JMSF024E19+           CAGTTTTCCAACTGAGAAGGTATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
JMFF036I21+           CAGTTTTCCAACTGAGAAGGTATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
JMSF030B19+           CAGTTTTCCAACTGAGAAGGTATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
JMSF041E15+           CAGTTTTCCAACTGAGAAGGTATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
JMFF013M06+                               TATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
                      ____________________________________________________________
consensus             CAGTTTTCCAACTGAGAAGGTATTTCCCCATAAAAGTTGTTGTCATGAAGTGATAAGAAT
 
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JMSF024E19+           TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
JMFF036I21+           TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
JMSF030B19+           TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
JMSF041E15+           TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
JMFF013M06+           TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
                      ____________________________________________________________
consensus             TGCAACTGTTGTAGTTTCCCGATGTCTGGTGATATAGGTCCACTCAACTTGTGATTAGGT
 
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JMSF024E19+           AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
JMFF036I21+           AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
JMSF030B19+           AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
JMSF041E15+           AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
JMFF013M06+           AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
                      ____________________________________________________________
consensus             AGGCTCAAGGATGTAACTCGCTTTGATTTGGGGTCACATTTTACTCCTTTCCACCTACAT
 
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JMSF024E19+           GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
JMFF036I21+           GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
JMSF030B19+           GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
JMSF041E15+           GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
JMFF013M06+           GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
                      ____________________________________________________________
consensus             GGGTCAGGATCTTCAGGTCTCCACTGGTGAAGAACATCATCTGAACTAATTAGTGCTGTT
 
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JMSF024E19+           TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
JMFF036I21+           TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
JMSF030B19+           TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
JMSF041E15+           TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
JMFF013M06+           TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
                      ____________________________________________________________
consensus             TTAAAGTTAACAAGTGCTTGACCATCAGGACTAAGAGGTTGCACTTCTACCAAAATGCAG
 
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JMSF024E19+           AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
JMFF036I21+           AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
JMSF030B19+           AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
JMSF041E15+           AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
JMFF013M06+           AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
                      ____________________________________________________________
consensus             AGTAACAGGGTGTATAAAAGCAATGGCTGCCCAGAATTCAGACAAAATCTGCCCATTTTG
 
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JMSF024E19+           GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
JMFF036I21+           GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
JMSF030B19+           GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
JMSF041E15+           GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
JMFF013M06+           GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
                      ____________________________________________________________
consensus             GCACTGGTCAAGCATAGGATTATTGCAAATCATTTGAGGCAACAGGCTGAGTGATTGCTC
 
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JMSF024E19+           CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
JMFF036I21+           CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
JMSF030B19+           CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
JMSF041E15+           CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
JMFF013M06+           CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
                      ____________________________________________________________
consensus             CCGTGGACATACAGTTAAAAACTTGATGATACAAAAGAGAAGCCACTTTACAAAGATATT
 
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JMSF024E19+           TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
JMFF036I21+           TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
JMSF030B19+           TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
JMSF041E15+           TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
JMFF013M06+           TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
                      ____________________________________________________________
consensus             TTAGCTCCCTGGACAGAGTTAGATTCGATCTGTGAAGCAGCGGTGGGAGCTCATTTCAGG
 
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JMSF024E19+           CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTAT                 
JMFF036I21+           CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTAT                 
JMSF030B19+           CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTA                  
JMSF041E15+           CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTAT                 
JMFF013M06+           CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTATAGCTGTAAAGTTGAGTT
                      ____________________________________________________________
consensus             CTTTCAGTTCATGGAAAAGGAGAGAGAGAGAGATGGAAAGTATAGCTGTAAAGTTGAGTT