Contig 001613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004C15Sequence554001613 (5)ref|XP_002308618.1|9e-98aspartate transaminase family protein [Populus trichocarpa] gb|EEE92141.1| aspar740008306 (6)ref|XP_009762342.1|9e-130PREDICTED: aspartate aminotransferase, cytoplasmic [Nicotiana sylvestris]
JMFF007P24Sequence573001613 (5)ref|XP_010693429.1|5e-94PREDICTED: aspartate aminotransferase, cytoplasmic [Beta vulgaris subsp. vulgar769008306 (6)ref|XP_009762342.1|1e-119PREDICTED: aspartate aminotransferase, cytoplasmic [Nicotiana sylvestris]
JMFF012N21Sequence490001613 (5)ref|XP_002308618.1|1e-56aspartate transaminase family protein [Populus trichocarpa] gb|EEE92141.1| aspar417008306 (6)ref|XP_008220042.1|7e-50PREDICTED: aspartate aminotransferase, cytoplasmic [Prunus mume]
JMFF017F14Sequence592001613 (5)emb|CDP03316.1|1e-108unnamed protein product [Coffea canephora]743008306 (6)ref|XP_009782665.1|3e-101PREDICTED: aspartate aminotransferase, cytoplasmic [Nicotiana sylvestris]
JMFF041M07Sequence644001613 (5)emb|CDP03316.1|8e-99unnamed protein product [Coffea canephora]573008306 (6)ref|XP_009617506.1|3e-68PREDICTED: aspartate aminotransferase, cytoplasmic [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF017F14+                 TATGAGCACATGCATGGAGAAGGACTACTGCTCCAACTGGGGCAGCACTAAGAT
JMFF004C15+                                                        GGGCAGCACTAAGAT
JMFF041M07+            TGGGTTATGAGCACATGCATGGAGAAGGACTACTGCTCCAACT-GGGCAGCACTAAGAT
                      ____________________________________________________________
consensus              TGGGTTATGAGCACATGCATGGAGAAGGACTACTGCTCCAACTGGGGCAGCACTAAGAT
 
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JMFF007P24+                        CTGGAAATTCAAGCCCCGCGTTTCTGGGTTATAGTAGCGGTAGGTCT
JMFF017F14+           CATCTATCATTCCCTGGAAATTCAAGCCCCGCGTTTCTGGGTTATAGTAGCGGTAGGTCT
JMFF004C15+           CATCTATCATTCCCTGGAAATTCAAGCCCCGCGTTTCTGGGTTATAGTAGCGGTAGGTCT
JMFF041M07+           CATCTATCATTCCCTGGAAATTCAAGCCCCGCGTTTCTGGGTTATAGTAGCGGTAGGTCT
                      ____________________________________________________________
consensus             CATCTATCATTCCCTGGAAATTCAAGCCCCGCGTTTCTGGGTTATAGTAGCGGTAGGTCT
 
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JMFF007P24+           TCACTGTCAATCCAGATAACGTGAAAACCTTCGGATGATTTCCCCATGTTGGCAGAGGAA
JMFF017F14+           TCACTGTCAATCCAGATAACGTGAAAACCTTCGGATGATTTCCCCATGTTGGCAGAGGAA
JMFF004C15+           TCACTGTCAATCCAGATAACGTGAAAACCTTCGGATGATTTCCCCATGTTGGCAGAGGAA
JMFF041M07+           TCACTGTCAATCCAGATAACGTGAAAACCTTCGGATGATTTCCCCATGTTGGCAGAGGAA
                      ____________________________________________________________
consensus             TCACTGTCAATCCAGATAACGTGAAAACCTTCGGATGATTTCCCCATGTTGGCAGAGGAA
 
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JMFF007P24+           TGTATATAGTATGCTCATGATAGTGCCTAGCCAGGAACTCTCCACCAACCCTCAATGAAC
JMFF017F14+           TGTATATAGTATGCTCATGATAGTGCCTAGCCAGGAACTCTCCACCAACCCTCAATGAAC
JMFF004C15+           TGTATATAGTATGCTCATGATAGTGCCTAGCCAGGAACTCTCCACCAACCCTCAATGAAC
JMFF041M07+           TGTATATAGTATGCTCATGATAGTGCCTAGCCAGGAACTCTCCACCAACCCTCAATGAAC
JMFF012N21+                                                             CTCAATGAAC
                      ____________________________________________________________
consensus             TGTATATAGTATGCTCATGATAGTGCCTAGCCAGGAACTCTCCACCAACCCTCAATGAAC
 
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JMFF007P24+           CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATCAG
JMFF017F14+           CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATCAG
JMFF004C15+           CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATTAG
JMFF041M07+           CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATCAG
JMFF012N21+           CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATCAG
                      ____________________________________________________________
consensus             CAGTTCCAGACAAGCATTGGACAGTAGTCACCCTGCCCTCTTGAATGGCACGGCAATCAG
 
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JMFF007P24+           CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
JMFF017F14+           CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
JMFF004C15+           CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
JMFF041M07+           CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
JMFF012N21+           CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
                      ____________________________________________________________
consensus             CACCAAATATTAGCTTTGCACTCAGTTTGTTAAACTCCGTCAGTCCAGTGATGGGTAGAT
 
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JMFF007P24+           ACTCTTTCACACGAGCCTTATTGCTTACAAGGATTTCCTCAGCCCGCTTCACCACATTAA
JMFF017F14+           ACTCTCTCACACGAGCCTTATTGCTTACAAGGATTTCCTCAGCCCGCTTCACCACATTAA
JMFF004C15+           ACTCTTTCACACGAGCCTTATTGCTTACAAGGATTTCCTAAGCCCGCTTCACCACATTAA
JMFF041M07+           ACTCTTTCACACGAGCCTTATTGCTTACAAGGATTTCCTCAGCCCGCTTCACCACATTAA
JMFF012N21+           ACTCTTTCACACGAGCCTTATTGCTTACAAGGATTTCCTCAGCCCGCTTCACCACATTAA
                      ____________________________________________________________
consensus             ACTCTTTCACACGAGCCTTATTGCTTACAAGGATTTCCTCAGCCCGCTTCACCACATTAA
 
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JMFF007P24+           GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
JMFF017F14+           GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
JMFF004C15+           GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
JMFF041M07+           GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
JMFF012N21+           GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
                      ____________________________________________________________
consensus             GAACAAGGGGCTTCCCTTCCTCAGTTCGATAAGCGCCAACGCCCAAATTCAGCTTTACTG
 
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JMFF007P24+           GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
JMFF017F14+           GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
JMFF004C15+           GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
JMFF041M07+           GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
JMFF012N21+           GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
                      ____________________________________________________________
consensus             GGCTAGGATCGCTGTTGTAAGCAACAGTGACCCCAAGGATTGGATCTTCATGGGCACGAG
 
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JMFF007P24+           CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTATGA
JMFF017F14+           CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTAT  
JMFF004C15+           CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTAT  
JMFF041M07+           CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTATGA
JMFF012N21+           CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTATGA
                      ____________________________________________________________
consensus             CAACATGGGAAAAGGCGGAATCAGAGGGAGCTGACATTTTCACAAGTAAATTTTTTATGA
 
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JMFF007P24+           TCAGAAAACTTGAGATGAATCGCTATATATAGAGGTAGAAGAAAGT              
JMFF041M07+           TCAGAAAACTTGAGATGAATCGCTATATATAGAGGTAGAAGAAAGT              
JMFF012N21+           TCAGAAAACTTGAGATGAATCGCTATACATAGAGGTAGAAGAAAGTATGTATAAAGTATA
                      ____________________________________________________________
consensus             TCAGAAAACTTGAGATGAATCGCTATATATAGAGGTAGAAGAAAGTATGTATAAAGTATA
 
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JMFF012N21+           TTCCAGTGAGAATTATTGTGAGTAGAATGGAGGATGCGTGAAAACTGAAAAAGTATAGTT
                      ____________________________________________________________
consensus             TTCCAGTGAGAATTATTGTGAGTAGAATGGAGGATGCGTGAAAACTGAAAAAGTATAGTT