Contig 001608:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF011M20-                                                        CTTATTCTCTTATA
                      ____________________________________________________________
consensus                                                           CTTATTCTCTTATA
 
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rJMFF011M20-          CTAAATGCATGCATATATAATCCAGTCAAAAGTGAAGCTGTACAGCAAAGTGTATATATA
                      ____________________________________________________________
consensus             CTAAATGCATGCATATATAATCCAGTCAAAAGTGAAGCTGTACAGCAAAGTGTATATATA
 
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rJMFF011M20-          GGCCGGATCATCGGAGAATTTATATGTGGTGAGCTAGCTAGGGGTAGCGCTTCCATGAAT
                      ____________________________________________________________
consensus             GGCCGGATCATCGGAGAATTTATATGTGGTGAGCTAGCTAGGGGTAGCGCTTCCATGAAT
 
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rJMFF011M20-          CGTCGGCCCTGTTGTTTCTAAAGGCGCAGCATCCAACAGTGTATACGATGATGAGGAAGA
                      ____________________________________________________________
consensus             CGTCGGCCCTGTTGTTTCTAAAGGCGCAGCATCCAACAGTGTATACGATGATGAGGAAGA
 
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rJMFF011M20-          CGATGAAGATGATGTTGAGGATGGCTACCTTCTTCCAGTCACTCTTAATGTTGTCGATAA
                      ____________________________________________________________
consensus             CGATGAAGATGATGTTGAGGATGGCTACCTTCTTCCAGTCACTCTTAATGTTGTCGATAA
 
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rJMFF011M20-          GCCCAGCTTTGCAGGACTGGCAGTTGTAGCACAGTATGTTGGCCTCATTGCTCCAATTAT
                      ____________________________________________________________
consensus             GCCCAGCTTTGCAGGACTGGCAGTTGTAGCACAGTATGTTGGCCTCATTGCTCCAATTAT
 
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rJMFF011M20-          TACAGTCCGGATTCGTGGACGATGAGGTTGCACTCCTAGTCCAGTTGGTCGGGCTGACGT
                      ____________________________________________________________
consensus             TACAGTCCGGATTCGTGGACGATGAGGTTGCACTCCTAGTCCAGTTGGTCGGGCTGACGT
 
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rJMFF011M20-          ACTCGAATTTGCAGTCATCTGATGGCTTGCAGCAACCAGACTGAAGGGCGGAGAGATGTT
JMFN046K23+                                                      AAGGGCGGAGAGATGTT
                      ____________________________________________________________
consensus             ACTCGAATTTGCAGTCATCTGATGGCTTGCAGCAACCAGACTGAAGGGCGGAGAGATGTT
 
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rJMFF011M20-          GGTTGTAGAAACTTTGAACCGGAGTTCCAGATCCTTCATCAATCAAGCTCTTGCAGACTT
JMFN046K23+           GGTTATAGAAACTTTGAAAAGGAGTTCCAGATCTTTGATCAATCAAACTCTTGCAGACTT
                      ____________________________________________________________
consensus             GGTTGTAGAAACTTTGAACCGGAGTTCCAGATCTTTGATCAATCAAGCTCTTGCAGACTT
 
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rJMFF011M20-          TACTGTCCTCGATGCAGCTCCGAATCCTCCGCCAGTTCCTATTCACCCTCCTCTGAAGCC
JMFN046K23+           TACTGTCATGGGTGCAGCTCCGAATCCTACGCCAGTTCCTATTGACCATCTTCTGAAGCC
JMFF011M20+                                                              TCTGAAGCC
                      ____________________________________________________________
consensus             TACTGTCCTGGGTGCAGCTCCGAATCCTCCGCCAGTTCCTATTGACCCTCTTCTGAAGCC
 
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rJMFF011M20-          AGTTGGAGTAGTCCCCAAGCCGATACTCC                               
JMFN046K23+           AATTGGAGTAGTCCTCAAGCCGATACTCCATGTCGCCTTTCCCGGAGATGGCCTCACCGG
JMFF011M20+           AGTTGGAGTAGTCCCCAAGCCGATACTCCTTGTAGCCTTTCCCGGAGATGGCCTCGCCGG
                      ____________________________________________________________
consensus             AGTTGGAGTAGTCCCCAAGCCGATACTCCTTGTCGCCTTTCCCGGAGATGGCCTCGCCGG
 
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JMFN046K23+           CACCCTTGTTGGTGACCACAAAGGCAAAGACAGTGAAGCAGAAGAGGATGACGATGAGGA
JMFF011M20+           CGCCCTTGTTGGTGACCACAAAGGCGAAGATAGTGAAGCAGAAGAGGAGGAGGATGAGGA
                      ____________________________________________________________
consensus             CGCCCTTGTTGGTGACCACAAAGGCGAAGATAGTGAAGCAGAAGAGGATGAGGATGAGGA
 
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JMFN046K23+           AGAACATGACGAAGAGGTATATCCATAGGAGCCAGGTGACCCGGCAGCAGGCGCCCACGA
JMFF011M20+           GGAACATGACGAATAGGTATATCCAGAGGAGCCAGGTGACCCGGCAGCAGGCGCCGACGA
                      ____________________________________________________________
consensus             GGAACATGACGAATAGGTATATCCATAGGAGCCAGGTGACCCGGCAGCAGGCGCCGACGA
 
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JMFN046K23+           GGCCTGTGAGTGA-CAGCAGCATGATGAAAACCCCTAGGGCTATCACAGGCTTGTCCAGG
JMFF011M20+           GGCCTGCGAGTGAGGAGCAGCATGATGAAAACCCCTAGGGCTATCACAGGTTTGTCCAGG
                      ____________________________________________________________
consensus             GGCCTGTGAGTGAGGAGCAGCATGATGAAAACCCCTAGGGCTATCACAGGTTTGTCCAGG
 
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JMFN046K23+           AAACGCTCGCACTCTGTGTTTCCCTGCCTGGACAGCCATATCTCGCCGCCGATG-TCGAG
JMFF011M20+           AAACGCTCGCACTCCGTGTTGGCTTGCCTGGATAGCCATATCCCGCCGCCGATGATCGGA
                      ____________________________________________________________
consensus             AAACGCTCGCACTCTGTGTTTGCTTGCCTGGATAGCCATATCTCGCCGCCGATGATCGGG
 
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JMFN046K23+           ATGGAGATTAAGAATATGATTATGTTGAGAATTCCCAGGAGGTTGTTGATAACCCTCACC
JMFF011M20+           ATGGAGATTAAGAATGTGATTATGTTCAGAATTCCCAGCAGGTTGTTGCTCACCCTCACC
                      ____________________________________________________________
consensus             ATGGAGATTAAGAATGTGATTATGTTGAGAATTCCCAGGAGGTTGTTGCTCACCCTCACC
 
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JMFN046K23+           A                                                           
JMFF011M20+           ATCGATATTTCTTAGTAAAATTAACACTTGGACTGAACCACTAGACCCGATCTTCTTTGC
                      ____________________________________________________________
consensus             ATCGATATTTCTTAGTAAAATTAACACTTGGACTGAACCACTAGACCCGATCTTCTTTGC
 
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JMFF011M20+           TTTTCTTTGATCGAGGAATCAGAGAATAGAGGAAATTTTAATTTTGTGTTGAGGATAATT
                      ____________________________________________________________
consensus             TTTTCTTTGATCGAGGAATCAGAGAATAGAGGAAATTTTAATTTTGTGTTGAGGATAATT