Contig 001605:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A18Sequence384001605 (4)758001024 (4)gb|KDO75058.1|2e-96hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet
JMFF003K09Sequence419001605 (4)ref|XP_006342737.1|3e-09PREDICTED: tubby-like F-box protein 6-like isoform X1 [Solanum tuberosum]757001024 (4)gb|KDO75058.1|4e-97hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet
JMFF011J17Sequence468001605 (4)ref|XP_006342738.1|2e-14PREDICTED: tubby-like F-box protein 6-like isoform X2 [Solanum tuberosum]735001024 (4)gb|KDO75058.1|3e-97hypothetical protein CISIN_1g0164722mg [Citrus sinensis] gb|KDO75059.1| hypothet
JMFS139C04Sequence619001605 (4)ref|XP_006342738.1|1e-56PREDICTED: tubby-like F-box protein 6-like isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS139C04+                                  TATAATGTAGTCAGTGCACGTTGTTCGCCTATACTTG
                      ____________________________________________________________
consensus                                    TATAATGTAGTCAGTGCACGTTGTTCGCCTATACTTG
 
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JMFS139C04+           CGAGCCGCAAGCAGAAACTTCCCGTCATCAGTCAATGCTTGAGACAAATTGAGGTAAAGA
                      ____________________________________________________________
consensus             CGAGCCGCAAGCAGAAACTTCCCGTCATCAGTCAATGCTTGAGACAAATTGAGGTAAAGA
 
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JMFS139C04+           TGAAACGTCTGTGAAGTGTTGCTCCGCTTTAGAAAGCACTGCATCATAGTGTCTCTCGGG
                      ____________________________________________________________
consensus             TGAAACGTCTGTGAAGTGTTGCTCCGCTTTAGAAAGCACTGCATCATAGTGTCTCTCGGG
 
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JMFS139C04+           CCAGGCTGCTTTACTGCAATGGGGAAAGTGATTCTGCCACTAACTTCAGGGGTCTGAACC
JMFF011J17+                         TGCAATGGGGAAAGTGATTNTGNCANTAANTTCAGGGGTNTGAACC
                      ____________________________________________________________
consensus             CCAGGCTGCTTTACTGCAATGGGGAAAGTGATTCTGCCACTAACTTCAGGGGTCTGAACC
 
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JMFS139C04+           ACCTCCTTCAAGATCTCCCTCCAGCTCCTACAAACCCCAGCACAAGCCACCACACTTTTC
JMFF001A18+                                               CCAGCNCAAGCCNCCNCANTTTTC
JMFF003K09+              TCCTTCAAGATCTCCCTCCAGCTCCTACAAACCCCAGCACAAGCCACCACACTTTTC
JMFF011J17+           ACCTCCTTCAAGATCTCCCTCCAGCTCNTACAAACCCCAGCACAAGCCACCACACTTTTC
                      ____________________________________________________________
consensus             ACCTCCTTCAAGATCTCCCTCCAGCTCCTACAAACCCCAGCACAAGCCACCACACTTTTC
 
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JMFS139C04+           CTCAAGGGCCACTTTCCCTCACACTCTTCAACCCTCATCAACACCTCTCTCAACAGCTCG
JMFF001A18+           NTCAAGGGCCANTTTCCNTCACANTNTTCAACCNTCATCAACACCTCTCTCAACAGCTCG
JMFF003K09+           CTCAAGGGCCACTTTCCCTCACACTCTTCAACCCTCATCAACACCTCTCTCAACAGCTCG
JMFF011J17+           CTCAAGGGCCACTTTCCCTCACACTCTTCAACCCTCATCAACACCTCTCTCAACAGCTCG
                      ____________________________________________________________
consensus             CTCAAGGGCCACTTTCCCTCACACTCTTCAACCCTCATCAACACCTCTCTCAACAGCTCG
 
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JMFS139C04+           ATGGGCATCTCAGCCCAGAAGCTCCGCCTCAAACCATCACACCCACCACCCAGAAACACC
JMFF001A18+           ATGGGCATCTCAGCCCAGAAGCTCCGCCTCAAACCATCACACCCACCACCCAGAAACACC
JMFF003K09+           ATGGGCATCTCAGCCCAGAAGCTCCGCCTCAAACCATCACACCCACCACCCAGAAACACC
JMFF011J17+           ATGGGCATCTCAGCCCAAAAGCTCCGCCTCAAACCATCACACCCACCACCCAGAAACACC
                      ____________________________________________________________
consensus             ATGGGCATCTCAGCCCAGAAGCTCCGCCTCAAACCATCACACCCACCACCCAGAAACACC
 
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JMFS139C04+           TCCGACGGCTCCTCCGCCGCCACCGCCGAGCTGTGGCGGCTCCTTGACCTGGACCCGTAA
JMFF001A18+           TCCGACGGCTCCTCCGCCGCCACCGCCGAGCTGTGGCGGCTCCTTGACCTGGACCCGTAA
JMFF003K09+           TCCGACGGCTCCTCCGCCGCCACCGCCGAGCTGTGGCGGCTCCTTGACCTGGACCCGTAA
JMFF011J17+           TCCGACGGCTCCTCCGCCGCCACCGCCGAGCTGTGGCGGCTCCTTGACCTGGACCCGTAA
                      ____________________________________________________________
consensus             TCCGACGGCTCCTCCGCCGCCACCGCCGAGCTGTGGCGGCTCCTTGACCTGGACCCGTAA
 
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JMFS139C04+           TTCCACTTCATCTCCCCCGCTTTCTCAAGGACTTCCAGAACTACCCACCACTCTGAATTG
JMFF001A18+           TTCCACTTCATCTCCCCCGCTTTCTCAAGGACTTCCAGAACTACCCACCACTCTGAATTG
JMFF003K09+           TTCCACTTCATCTCCCCCGCTTTCTCAAGGACTTCCAGAACTACCCACCACTCTGAATTG
JMFF011J17+           TTCCACTCCATCTCCCCCGCTTTCTCAAGGACTTCCAGAACTACCCACCACTCTGAATTG
                      ____________________________________________________________
consensus             TTCCACTTCATCTCCCCCGCTTTCTCAAGGACTTCCAGAACTACCCACCACTCTGAATTG
 
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JMFS139C04+           AAACAGCTCCAAATCACCCAGAACTAGCAACAACAAATATAGATACAGCAATACACACTC
JMFF001A18+           AAACAGCTCCAAATCACCCAGAACTAGCAACAACAAATATAGATACAGCAATACACACTC
JMFF003K09+           AAACAGCTCCAAATCACCCAGAACTAGCAACAACAAATATAGATACAGCAATACACACTC
JMFF011J17+           AAACAGCTCCAAATCACCCAGAACTAGCAACAACAAATATAGATACAGCAATACACACTC
                      ____________________________________________________________
consensus             AAACAGCTCCAAATCACCCAGAACTAGCAACAACAAATATAGATACAGCAATACACACTC
 
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JMFS139C04+           ACACACATAAGCACTATATGCATAGATTTACAGGATGATGAA                  
JMFF001A18+           ACACACATAAGCACTATATGCATAGATTTACAGGATGATGAATTTAAGAGAGAGCAATTC
JMFF003K09+           ACACACATAAGCACTATATGCATAGATTTACAGGATGATGAATTTAAGAGAGAGCAATTC
JMFF011J17+           ACACACATAAGCACTATATGCATAGATTTACAGGATGATGAATTTAAGAGAGAGCAATTC
                      ____________________________________________________________
consensus             ACACACATAAGCACTATATGCATAGATTTACAGGATGATGAATTTAAGAGAGAGCAATTC