| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K10 | Sequence | 596 | 001596 (3) | ref|XP_010060738.1| | 1e-110 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 717 | 006502 (6) | emb|CDO96861.1| | 3e-113 | unnamed protein product [Coffea canephora] |
| JMFF009K21 | Sequence | 576 | 001596 (3) | ref|XP_010060738.1| | 1e-95 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 683 | 006502 (6) | emb|CDO96861.1| | 5e-107 | unnamed protein product [Coffea canephora] |
| JMSF036K19 | Sequence | 683 | 001596 (3) | ref|XP_010060738.1| | 4e-127 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 700 | 006502 (6) | emb|CDO96861.1| | 4e-87 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF036K19+ ACGGCCAGTATTAATGGTTGTGGGACTGAATGCTTTCCAGATAATATTTTCA
____________________________________________________________
consensus ACGGCCAGTATTAATGGTTGTGGGACTGAATGCTTTCCAGATAATATTTTCA
. : . : . : . : . : . :
JMSF036K19+ CAGATATTGGTAAGCTATAAATAGGGAAATCCCAGAACCAAGACCATATCCTTTCTGGAG
____________________________________________________________
consensus CAGATATTGGTAAGCTATAAATAGGGAAATCCCAGAACCAAGACCATATCCTTTCTGGAG
. : . : . : . : . : . :
JMSF036K19+ GAGTTCATCTAAACAGATGACGATAATACCAGCAAAGCAAAGTTGAATAATGATAAGAAT
JMFF004K10+ GACGATAATACCAGCAAAGCAAAGTTGAATAATGATAAGAAT
____________________________________________________________
consensus GAGTTCATCTAAACAGATGACGATAATACCAGCAAAGCAAAGTTGAATAATGATAAGAAT
. : . : . : . : . : . :
JMSF036K19+ AGCATTCCCAACACCCAATTGACCAACACTTCCATACATCCCTGATAGGACATAAGCAAC
JMFF004K10+ AGCATTCCCAACACCCAATTGACCAACACTTCCATACATCCCTGATAGGACATAAGCAAC
JMFF009K21+ AACACTTCCATACATCCCTGATAGGACATAAGCAAC
____________________________________________________________
consensus AGCATTCCCAACACCCAATTGACCAACACTTCCATACATCCCTGATAGGACATAAGCAAC
. : . : . : . : . : . :
JMSF036K19+ TGCCTCCCCAATAGCAATCAGGATACCTAACAACTTTTGAGCACCATTTAATAGTGCACG
JMFF004K10+ TGCCTCCCCAATAGCAATCAGGATACCTAACAACTTTTGAGCACCATTTAATAGTGCACG
JMFF009K21+ TGCCTCCCCAATAGCAATCAGGATACCTAACAACTTTTGAGCACCATTTAATAGTGCACG
____________________________________________________________
consensus TGCCTCCCCAATAGCAATCAGGATACCTAACAACTTTTGAGCACCATTTAATAGTGCACG
. : . : . : . : . : . :
JMSF036K19+ GTCCTCTCTGACATTGTTGTCCACTTCAATGATTTTTGAACCAGCCAATAGTTGCATCAC
JMFF004K10+ GTCCTCTCTGACATTGTTGTCCACTTCAATGATTTTTGAACCAGCCAATAGTTGCATCAC
JMFF009K21+ GTCCTCTCTGACATTGTTGTCCACTTCAATGATTTTTGAACCAGCCAATAGTTGCATCAC
____________________________________________________________
consensus GTCCTCTCTGACATTGTTGTCCACTTCAATGATTTTTGAACCAGCCAATAGTTGCATCAC
. : . : . : . : . : . :
JMSF036K19+ CAACCCAGAAGTCACAATTGGTGTGATTCCCAACTCCATGACCGTACCACGGTTTGAGGC
JMFF004K10+ CAACCCAGAAGTCACAATTGGTGTGATTCCCAACTCCATGACCGTACCACGGTTTGAGGC
JMFF009K21+ CAACCCAGAAGTCACAATTGGTGTGATTCCCAACTCCATGACCGTACCACGGTTTGAGGC
____________________________________________________________
consensus CAACCCAGAAGTCACAATTGGTGTGATTCCCAACTCCATGACCGTACCACGGTTTGAGGC
. : . : . : . : . : . :
JMSF036K19+ AAGAATAACACGCATCCAATAAAATGGATCAGCACCAGTTGTAGAGTGTATGCCATAAAG
JMFF004K10+ AAGAATAACACGCATCCAATAAAATGGATCAGCACCAGTTGTAGAGTGTATGCCATAAAG
JMFF009K21+ AAGAATAACACGCATCCAATAAAATGGATCAGCACCAGTTGTAGAGTGTATGCCATAAAG
____________________________________________________________
consensus AAGAATAACACGCATCCAATAAAATGGATCAGCACCAGTTGTAGAGTGTATGCCATAAAG
. : . : . : . : . : . :
JMSF036K19+ AGGAAGCTGACTGCAGACCAGGAAGATGAAAAGAGAGATCACAGTGTATATGACCTTCTC
JMFF004K10+ AGGAAGCTGACTGCAGACCAGGAAGATGAAAAGAGAGATCACAGTGTATATGACCTTCTC
JMFF009K21+ AGGAAGCTGACTGCAGACCAGGAAGATGAAAAGAGAGATCACAGTGTATATGACCTTCTC
____________________________________________________________
consensus AGGAAGCTGACTGCAGACCAGGAAGATGAAAAGAGAGATCACAGTGTATATGACCTTCTC
. : . : . : . : . : . :
JMSF036K19+ TCTGAAGGGAATCTTTCTGTCAGCACTCTGAACTTCTGGCAGAAATGAGAGAAATGGTTT
JMFF004K10+ TCTGAAGGGAATCTTTCTGTCAGCACTCTGAACTTCTGGCAGAAATGAGAGAAATGGTTT
JMFF009K21+ TCTGAAGGGAATCTTTCTGTCAGCACTCTGAACTTCTGGCAGAAATGAGAGAAATGGTTT
____________________________________________________________
consensus TCTGAAGGGAATCTTTCTGTCAGCACTCTGAACTTCTGGCAGAAATGAGAGAAATGGTTT
. : . : . : . : . : . :
JMSF036K19+ GACAAGATGCAGCACTCTGAACCCTCCACCCATTTTCACAAAAGGTAGAAACGCAGATCC
JMFF004K10+ GACAAGATGCAGCACTCTGAACCCTCCACCCATTTTCACAAAAGGTAGAAACGCAGATCC
JMFF009K21+ GACAAGATGCAGCACTCTGAACCCTCCACCCATTTTCACAAAAGGTAGAAACGCAGATCC
____________________________________________________________
consensus GACAAGATGCAGCACTCTGAACCCTCCACCCATTTTCACAAAAGGTAGAAACGCAGATCC
. : . : . : . : . : . :
JMSF036K19+ GCAGGAGGATGGCAAGAAAGGCTTTCACCT
JMFF004K10+ GCAGGAGGATGGCAAGAAAGGCTTTCACCTAGTCTCTCTCTCTCTCTCTCTCTC
JMFF009K21+ GCAGGAGGATGGCAAGAAAGGCTTTCACCTAGTCTCTCTCTCTCTCTCTCTCTCTGCTAT
____________________________________________________________
consensus GCAGGAGGATGGCAAGAAAGGCTTTCACCTAGTCTCTCTCTCTCTCTCTCTCTCTGCTAT
. : . : . : . : . : . :
JMFF009K21+ TTCTAGGGTTTTGGTGTGAGAGAGAAAGGTGAAACAATTTGATTGTGAGTACCGAGCCGT
____________________________________________________________
consensus TTCTAGGGTTTTGGTGTGAGAGAGAAAGGTGAAACAATTTGATTGTGAGTACCGAGCCGT