| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008J05 | Sequence | 578 | 001586 (12) | ref|XP_007134162.1| | 3e-69 | hypothetical protein PHAVU_010G024600g [Phaseolus vulgaris] gb|ESW06156.1| hypot | 824 | 001586 (12) | ref|XP_006437243.1| | 3e-94 | hypothetical protein CICLE_v10032694mg [Citrus clementina] gb|ESR50483.1| hypoth |
| JMFF027M18 | Sequence | 449 | 001586 (12) | ref|XP_010060252.1| | 2e-83 | PREDICTED: 40S ribosomal protein S8 [Eucalyptus grandis] gb|KCW66870.1| hypothet | 740 | 001586 (12) | dbj|BAA07207.1| | 2e-122 | ribosomal protein S8 [Oryza sativa Japonica Group] |
| JMFF043A10 | Sequence | 624 | 001586 (12) | dbj|BAA07207.1| | 8e-105 | ribosomal protein S8 [Oryza sativa Japonica Group] | 576 | 001586 (12) | emb|CDP03936.1| | 1e-73 | unnamed protein product [Coffea canephora] |
| JMFF046I18 | Sequence | 530 | 001586 (12) | ref|NP_001105391.1| | 5e-86 | 40S ribosomal protein S8 [Zea mays] ref|XP_008679873.1| PREDICTED: 40S ribosomal | 567 | 001586 (12) | emb|CDP03936.1| | 4e-61 | unnamed protein product [Coffea canephora] |
| JMFN034B10 | Sequence | 640 | 001586 (12) | dbj|BAA07207.1| | 1e-112 | ribosomal protein S8 [Oryza sativa Japonica Group] | |||||
| JMFN035B17 | Sequence | 586 | 001586 (12) | emb|CDP03936.1| | 1e-70 | unnamed protein product [Coffea canephora] | |||||
| JMFN040K05 | Sequence | 653 | 001586 (12) | dbj|BAA07207.1| | 6e-114 | ribosomal protein S8 [Oryza sativa Japonica Group] | |||||
| JMFN044L13 | Sequence | 551 | 001586 (12) | dbj|BAA07207.1| | 1e-91 | ribosomal protein S8 [Oryza sativa Japonica Group] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF046I18- C
____________________________________________________________
consensus C
. : . : . : . : . : . :
rJMFF046I18- CTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTTTTTTAAAGCAAAGCC
rJMFF043A10- TAAAGCAAAGCC
____________________________________________________________
consensus CTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTTTTTTAAAGCAAAGCC
. : . : . : . : . : . :
rJMFF046I18- CAGTAAAACTTCATAGAGTTATCAACTAATAAAAGTTCATGGCAAATTACAAAAAGTTTT
rJMFF043A10- CAGTAAAACTTCATAGAGTTATCAACTAATAAAAGTTCATGGCAAATTACAAAAAGTTTT
rJMFF027M18- AGAGTTATCAACTAATAAAAGTTCATGGCAAATTACAAAAAGTTTT
____________________________________________________________
consensus CAGTAAAACTTCATAGAGTTATCAACTAATAAAAGTTCATGGCAAATTACAAAAAGTTTT
. : . : . : . : . : . :
rJMFF046I18- GAGAAGAAAATAAAGTTGGTGAAAATTTAGTGAGGTGGAATTAAGCAGCACCAGCTCCAC
rJMFF043A10- GAGAAGAAAATAAAGTTGGTGAAAATTTAGTGAGGTGGAATTAAGCAGCACCAGCTCCAC
JMFN035B17+ AATTAAGCAGCACCAGCTCCAC
rJMFF027M18- GAGAAGAAAATAAAGTTGGTGAAAATTTAGTGAGGTGGAATTAAGCAGCACCAGCTCCAC
rJMFF008J05- AATTAAGCAGCACCAGCTCCAC
____________________________________________________________
consensus GAGAAGAAAATAAAGTTGGTGAAAATTTAGTGAGGTGGAATTAAGCAGCACCAGCTCCAC
. : . : . : . : . : . :
rJMFF046I18- CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
rJMFF043A10- CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
JMFN035B17+ CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
rJMFF027M18- CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
rJMFF008J05- CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
JMFN040K05+ AAAA
____________________________________________________________
consensus CCTTGCCCTTCTTTCTTTGGATCTTTTTCATGTAGAACTCGAGTTCTTTGCCCTCCAAAA
. : . : . : . : . : . :
rJMFF046I18- TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
rJMFF043A10- TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
JMFN035B17+ TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
rJMFF027M18- TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
rJMFF008J05- TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
JMFN034B10+ TAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
JMFN040K05+ TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
JMFF043A10+ TCGGGAAGAGATGCAGGCCATCAGCCTAC
____________________________________________________________
consensus TGTAACCATCAGCCCTCCCGCATTGGCCAGGTCGGGAAGAGATGCAGGCCATCAGCCTAC
. : . : . : . : . : . :
rJMFF046I18- CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
rJMFF043A10- CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
JMFN035B17+ CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
rJMFF027M18- CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
rJMFF008J05- CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
JMFN044L13+ GAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
JMFN034B10+ CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
JMFN040K05+ CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
JMFF043A10+ CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTNTACGATCCTTCTGTCGTTTCTCTA
JMFF008J05+ GGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
____________________________________________________________
consensus CAGCACCAAATTGCTCTTCAAGGTGAGCATCGAGTTTACGATCCTTCTGTCGTTTCTCTA
. : . : . : . : . : . :
rJMFF046I18- GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
rJMFF043A10- GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFN035B17+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
rJMFF027M18- GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
rJMFF008J05- GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFN044L13+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFN034B10+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFN040K05+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFF043A10+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFF046I18+ CTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
JMFF008J05+ GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCNTTCCT
____________________________________________________________
consensus GTTTCCTAACAACATGATTACTCTTCTTAGTCTCCTCAGCAGCCGCGGTTTCTCCTTCCT
. : . : . : . : . : . :
rJMFF046I18- CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
rJMFF043A10- CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFN035B17+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
rJMFF027M18- CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
rJMFF008J05- CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFN044L13+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFN034B10+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFN040K05+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFF043A10+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFF046I18+ CAGCAGCTTCCTTCTGACCAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFF027M18+ TTCTTCCTACCAATGTCAACACCGTAGTGCT
JMFF008J05+ CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
____________________________________________________________
consensus CAGCAGCTTCCTTCTTGACAGGCCCCTTCTTCTTCCTACCAATGTCAACACCGTAGTGCT
. : . : . : . : . : . :
rJMFF046I18- GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
rJMFF043A10- GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFN035B17+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
rJMFF027M18- GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
rJMFF008J05- GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFN044L13+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFN034B10+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFN040K05+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCATCAGAG
JMFF043A10+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFF046I18+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFF027M18+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
JMFF008J05+ GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
____________________________________________________________
consensus GGAGGTACCACTGCTTGAAAGGGGCTGCATCGACCTGAACAATTGCACTCTTCACCAGAG
. : . : . : . : . : . :
rJMFF046I18- TTTGTGTCCGAACAAGCTCATTATTC
rJMFF043A10- TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFN035B17+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
rJMFF027M18- TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
rJMFF008J05- TTTGTGT-CGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFN044L13+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFN034B10+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFN040K05+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFF043A10+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFF046I18+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFF027M18+ TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
JMFF008J05+ TTTGTGT-CGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
____________________________________________________________
consensus TTTGTGTCCGAACAAGCTCATTATTCGAGGCATTGTAGACAACATCCAGGACACGTGTCT
. : . : . : . : . : . :
rJMFF043A10- TCCTAGTAACAGCTTC
JMFN035B17+ TCCTA
rJMFF027M18- TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
rJMFF008J05- TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFN044L13+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFN034B10+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFN040K05+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFF043A10+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFF046I18+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFF027M18+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
JMFF008J05+ TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
____________________________________________________________
consensus TCCTAGTAACAGCTTCACTACCCCAAGAATAATTTCCTGTGTCCAATCTCAGAGCCCTCC
. : . : . : . : . : . :
rJMFF027M18- ATTTCACATTGCCCCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
rJMFF008J05- ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFN044L13+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFN034B10+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFN040K05+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFF043A10+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFF046I18+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFF027M18+ ATTTCACATTGCCCCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
JMFF008J05+ ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
____________________________________________________________
consensus ATTTCACATTGCCTCCTCGCACACGAATTCTTCTTACTGTTTTGTTGCTTGATAGTTTAG
. : . : . : . : . : . :
rJMFF027M18- TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
rJMFF008J05- TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFN044L13+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFN034B10+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFN040K05+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFF043A10+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFF046I18+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFF027M18+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
JMFF008J05+ TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
____________________________________________________________
consensus TATTTGCAGGTTGACGACCAAGCTCATACTTTCGCTTCTTCCTCCATGCCTTCTGCTTGC
. : . : . : . : . : . :
rJMFF027M18- CACCAGTGGCACGCCTCTTGTGCATTGAGTCACG
rJMFF008J05- CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAG
JMFN044L13+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFN034B10+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFN040K05+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFF043A10+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFF046I18+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFF027M18+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
JMFF008J05+ CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
____________________________________________________________
consensus CACCAGTGGCACGCCTCTTGTGCATTGAGTCACGAGAGATACCCATTTTTGCAGAGAGCT
. : . : . : . : . : . :
JMFN044L13+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTC
JMFN034B10+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGC
JMFN040K05+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAA
JMFF043A10+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAATCTG
JMFF046I18+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAATCTG
JMFF027M18+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAATCTG
JMFF008J05+ AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAATCTGCCAACTT
____________________________________________________________
consensus AAGGCGTCTCCTCCTTCAATCTCTCTCTCTCTCTCTCGCGGCCGTCGAATCTGCCAACTT