| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008G09 | Sequence | 458 | 001585 (4) | ref|XP_009767883.1| | 2e-41 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 450 | 011053 (4) | ref|XP_009762711.1| | 3e-59 | PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris] |
| JMFF021E18 | Sequence | 515 | 001585 (4) | ref|XP_009599780.1| | 4e-58 | PREDICTED: probable polygalacturonase isoform X1 [Nicotiana tomentosiformis] | 668 | 011053 (4) | ref|XP_009762711.1| | 1e-112 | PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris] |
| JMSF023L09 | Sequence | 665 | 001585 (4) | ref|XP_009767883.1| | 4e-43 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 800 | 011053 (4) | ref|XP_009762711.1| | 7e-151 | PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris] |
| JMSF036J24 | Sequence | 624 | 001585 (4) | ref|XP_009767883.1| | 2e-85 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 649 | 011053 (4) | ref|XP_009762711.1| | 2e-114 | PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF023L09+ CTTCCATGACCATA
____________________________________________________________
consensus CTTCCATGACCATA
. : . : . : . : . : . :
JMSF023L09+ TGATGGTAATGGCTCCACCACTTCCCAACTGCTTATTTCCTGAAATCAAAACTATACATT
____________________________________________________________
consensus TGATGGTAATGGCTCCACCACTTCCCAACTGCTTATTTCCTGAAATCAAAACTATACATT
. : . : . : . : . : . :
JMSF023L09+ ATCCCATTTATGATAATATTTATTTAGCCGGGAAAAGTCTACAATATTGATCGATACTAA
____________________________________________________________
consensus ATCCCATTTATGATAATATTTATTTAGCCGGGAAAAGTCTACAATATTGATCGATACTAA
. : . : . : . : . : . :
JMSF023L09+ TACTTTTTGCACCACGTACAAACATGTATTTTTTATACTGGTACCCGATGCAAAAGGTAC
____________________________________________________________
consensus TACTTTTTGCACCACGTACAAACATGTATTTTTTATACTGGTACCCGATGCAAAAGGTAC
. : . : . : . : . : . :
JMSF023L09+ CAACTTTGATGCAAGTAATATGTGTTTATAGTACCTGAGAAGCAAGAAGAACAGCATCTT
JMSF036J24+ CCTGAGAAGCAAGAAGAACAGCATCTT
JMFF021E18+ CCTGAGAAGCAAGAAGAACAGCATCTT
JMFF008G09+ CCTGAGAAGCAAGAAGANCAGCATCTT
____________________________________________________________
consensus CAACTTTGATGCAAGTAATATGTGTTTATAGTACCTGAGAAGCAAGAAGAACAGCATCTT
. : . : . : . : . : . :
JMSF023L09+ TGTCAAGAAAAAGAGTGAAATGGCTGGTGAGATTGAAAGATCCAGTCAACCAGCGACCAG
JMSF036J24+ TGTCAAGAAAAAGAGTGAAATGGCTGGTGAGATTGAAAGATCCAGTCAACCAGCGACCAG
JMFF021E18+ TGTCAAGAAAAAGAGTGAAATGGCTGGTGAGATTGAAAGATCCAGTCAACCAGCGACCAG
JMFF008G09+ TGTCAAGAAAAAGAGTGAAATGGCTGGTGAGATTGAAAGATCCAGTCAACCAGCGACCAG
____________________________________________________________
consensus TGTCAAGAAAAAGAGTGAAATGGCTGGTGAGATTGAAAGATCCAGTCAACCAGCGACCAG
. : . : . : . : . : . :
JMSF023L09+ CGGGGACAAAGAGCTGAGCACCACCCTGCTCTGCATACTGGCTCAACTCATTCACAGCGT
JMSF036J24+ CGGGGACAAAGAGCTGAGCACCACCCTGCTCTGCATACTGGCTCAACTCATTCACAGCGT
JMFF021E18+ CGGGGACAAAGAGCTGAGCACCACCCTGCTCTGCATACTGGCTCAACTCATTCACAGCGT
JMFF008G09+ CGGGGACAAAGAGNTGAGCACCACCCTGCTNTGCATACNGGCTCAACTCATTCACAGCGT
____________________________________________________________
consensus CGGGGACAAAGAGCTGAGCACCACCCTGCTCTGCATACTGGCTCAACTCATTCACAGCGT
. : . : . : . : . : . :
JMSF023L09+ TCTGAAACGCTTTTGTGTTGAGTGTTTTGCCATCCCCAACCCCTCCAAAATCTTTAATGG
JMSF036J24+ TCTGAAACGCTTTTGTGTTGAGTGTTTTGCCATCCCCAACCCCTCCAAAATCTTTAATGG
JMFF021E18+ TCTGAAACGCTTTTGTGTTGAGTGTTTTGCCATCCCCAACCCCTCCAAAATCTTTAATGG
JMFF008G09+ TCTGAAACGCTTTTGTGNNGAGTGTTTTGCCATCCCCAACCCCTCCAAAATCTTTAATGG
____________________________________________________________
consensus TCTGAAACGCTTTTGTGTTGAGTGTTTTGCCATCCCCAACCCCTCCAAAATCTTTAATGG
. : . : . : . : . : . :
JMSF023L09+ ATGCAGAATGAGCCCTGCAGTTTATAGCTGAATACTCCAACTCATAAAAATTACTATTGC
JMSF036J24+ ATGCAGAATGAGCCCTGCAGTTTATAGCTGAATACTCCAACTCATAAAAATTACTATTGC
JMFF021E18+ ATGCAGAATGAGCCCTGCAGTTTATAGCTGAATACTCCAACTCATAAAAATTACTATTGC
JMFF008G09+ ATGCAGAATGAGCCCTGCAGTTTATAGNTGAATACTCCAACTCATAAAAATTACTATNGC
____________________________________________________________
consensus ATGCAGAATGAGCCCTGCAGTTTATAGCTGAATACTCCAACTCATAAAAATTACTATTGC
. : . : . : . : . : . :
JMSF023L09+ TGTTTTCATCTTCAACAACTCCTCCCTTAAACCTTATCCCCTCAACCCATCCTGGACTGC
JMSF036J24+ TGTTTTCATCTTCAACAACTCCTCCCTTAAACCTTATCCCCTCAACCCATCCTGGACTGC
JMFF021E18+ TGTTTTCATCTTCAACAACTCCTCCCTTAAACCTTATCCCCTCAACCCATCCTGGACTGC
JMFF008G09+ TGTTTTCATCTTCAACAACTCCTCCCTTAAACCTTATCCCCTCAACCCATCCTGGACTGC
____________________________________________________________
consensus TGTTTTCATCTTCAACAACTCCTCCCTTAAACCTTATCCCCTCAACCCATCCTGGACTGC
. : . : . : . : . : . :
JMSF023L09+ TTAAAGCCATCCCCAATAACACTACCACTAATGTCTTCAACATTTGGAATCTTGATGGCA
JMSF036J24+ TTAAAGCCATCCCCAATAACACTACCACTAATGTCTTCAACATTTGGAATCTTGATGGCA
JMFF021E18+ TTAAGGCCATCCCCAATAACACTACCACTAATGTCTTCAACATTTGGAATCTTGATGGCA
JMFF008G09+ TTAAGGCCATCCCCAATAACACTACCACTAATGTCTTCAACATTTGGAATCTTGATGGCA
____________________________________________________________
consensus TTAAGGCCATCCCCAATAACACTACCACTAATGTCTTCAACATTTGGAATCTTGATGGCA
. : . : . : . : . : . :
JMSF023L09+ TTATAGGGAAGGAAGCCATTAATGGAGAGAGGTAGCTGAATTTGTTTGGT
JMSF036J24+ TTATAGGGAAGGAAGCCATTAATGGAGAGAGGTAGCTGAATTTGTTTGGT
JMFF021E18+ TTATAGGGAAGGAAGCCATTAATGGAGAGAGGTAGCTGAATTTGTTTGGTGCAGCGATGA
JMFF008G09+ TTATAGGGAAGGAAGCCATTAATGGAGAGAGGTAGCTGAATTTGTTTGGTGCAGCGATGA
____________________________________________________________
consensus TTATAGGGAAGGAAGCCATTAATGGAGAGAGGTAGCTGAATTTGTTTGGTGCAGCGATGA