Contig 001583:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008D08Sequence539001583 (6)ref|XP_011096679.1|4e-80PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]520001583 (6)ref|XP_011096679.1|3e-80PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]
JMFF013F20Sequence539001583 (6)ref|XP_011096679.1|4e-80PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]521001583 (6)ref|XP_011096679.1|3e-80PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]
JMFN007D10Sequence502001583 (6)ref|XP_011096679.1|3e-79PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]
JMFN036B11Sequence489001583 (6)ref|XP_011096679.1|1e-72PREDICTED: 50S ribosomal protein L20, chloroplastic [Sesamum indicum]

Alignment

This contig is upended


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JMFF013F20-            AGGGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
rJMFF008D08+           AGGGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
rJMFF013F20+           AGGGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
JMFN007D10-              GGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
JMFN036B11+                                                    GGGGTTCAGAGGGAGGGCG
JMFF008D08-            AGGGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
                      ____________________________________________________________
consensus              AGGGAATAATGAACAAGAAGGAGGTTTTGAAGCTAGCAAAGGGGTTCAGAGGGAGGGCG
 
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JMFF013F20-           AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
rJMFF008D08+          AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
rJMFF013F20+          AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
JMFN007D10-           AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
JMFN036B11+           AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
JMFF008D08-           AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
                      ____________________________________________________________
consensus             AAAAACTGTATAAGAATAGCAAGGGAGAGGGTGGAGAAAGCACTGCAGTACTCCTACAGA
 
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JMFF013F20-           GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
rJMFF008D08+          GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
rJMFF013F20+          GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
JMFN007D10-           GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
JMFN036B11+           GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
JMFF008D08-           GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
                      ____________________________________________________________
consensus             GACCGCCGCAACAAGAAGCGCGACATGCGCTCGCTTTGGATCCAGCGCATCAACGCCGGC
 
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JMFF013F20-           ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
rJMFF008D08+          ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
rJMFF013F20+          ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
JMFN007D10-           ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
JMFN036B11+           ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
JMFF008D08-           ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
                      ____________________________________________________________
consensus             ACTCGCCAACACGGAGTAAATTATGGTAATTTCATGCATGGACTGATGAAGGAAAATATC
 
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JMFF013F20-           CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
rJMFF008D08+          CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
rJMFF013F20+          CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
JMFN007D10-           CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
JMFN036B11+           CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
JMFF008D08-           CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
                      ____________________________________________________________
consensus             CAGCTAAACAGAAAAGTTTTGTCTGAGCTCTCAATGCACGAACCATATAGCTTCAAAGCC
 
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JMFF013F20-           CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
rJMFF008D08+          CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
rJMFF013F20+          CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
JMFN007D10-           CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTTCAACCCCAGAA
JMFN036B11+           CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
JMFF008D08-           CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
                      ____________________________________________________________
consensus             CTGGTTGACATCTCACGAACTGCTTTCCCTGGTAACAAGACGGTCATTCCAACCCCAGAA
 
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JMFF013F20-           AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
rJMFF008D08+          AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
rJMFF013F20+          AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
JMFN007D10-           AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
JMFN036B11+           AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
JMFF008D08-           AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
                      ____________________________________________________________
consensus             AAGAAGGGTCTTTCAATTCTTGTTTAACTCACAATTTCTGTCAATTGTCATGTGTCCCAT
 
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JMFF013F20-           TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
rJMFF008D08+          TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
rJMFF013F20+          TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
JMFN007D10-           TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
JMFN036B11+           TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
JMFF008D08-           TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
                      ____________________________________________________________
consensus             TTAAAGAGAGAACACGGTTATGCTTGTGTTTTATCTCAAGTAAATGACTGTCAATTTGAG
 
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JMFF013F20-           AAATCATCAGAATCTTTTGCCTAATAACAAATATGAACAAACTGTTATGCAAAAAAAAAA
rJMFF008D08+          AAATCATCAGAATCTTTTGCCTAATAACAAATA                           
rJMFF013F20+          AAATCATCAGAATCTTTTGCCTAATAACAAATA                           
JMFN007D10-           AAATCATCAGAATCTTTTGCCTAAT                                   
JMFN036B11+           AAATCATCAGAATCTTTTGCCTAATAACAAATATGAACAAACTGTTATGC          
JMFF008D08-           AAATCATCAGAATCTTTTGCCTAATAACAAATATGAACAAACTGTTATGCAAAAAAAAAA
                      ____________________________________________________________
consensus             AAATCATCAGAATCTTTTGCCTAATAACAAATATGAACAAACTGTTATGCAAAAAAAAAA