clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007G10 | Sequence | 488 | 001580 (7) | 783 | 012247 (2) | gb|KDP39134.1| | 2e-80 | hypothetical protein JCGZ_00891 [Jatropha curcas] | |||
JMFF009K20 | Sequence | 483 | 001580 (7) | 695 | 012247 (2) | gb|KDP39134.1| | 4e-78 | hypothetical protein JCGZ_00891 [Jatropha curcas] | |||
JMFF046J23 | Sequence | 525 | 001580 (7) | gb|AAG50783.1|AC079027_6 | 3e-21 | hypothetical protein, 3' partial [Arabidopsis thaliana] | 521 | 001216 (5) | ref|XP_002316767.2| | 6e-29 | hypothetical protein POPTR_0011s09280g [Populus trichocarpa] gb|EEE97379.2| hypo |
JMSF007B04 | Sequence | 298 | 001580 (7) | 769 | 001216 (5) | gb|KDP39134.1| | 7e-75 | hypothetical protein JCGZ_00891 [Jatropha curcas] | |||
JMSF040O10 | Sequence | 614 | 001580 (7) | gb|AAG50783.1|AC079027_6 | 2e-29 | hypothetical protein, 3' partial [Arabidopsis thaliana] | 854 | 001216 (5) | ref|XP_002280015.1| | 362 | PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3| |
JMSF043F04 | Sequence | 778 | 001580 (7) | ref|XP_009592787.1| | 239 | PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis] | 748 | 001216 (5) | gb|KDP39134.1| | 1e-76 | hypothetical protein JCGZ_00891 [Jatropha curcas] |
JMSF044F09 | Sequence | 817 | 001580 (7) | ref|XP_009592787.1| | 239 | PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis] | 825 | 001216 (5) | ref|XP_002280015.1| | 342 | PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3| |
This contig is upended
. : . : . : . : . : . :
JMSF044F09+ ATAGAAGGTTNTGAAGCATCAGTAGCACTACTAGAT
____________________________________________________________
consensus ATAGAAGGTTNTGAAGCATCAGTAGCACTACTAGAT
. : . : . : . : . : . :
JMSF044F09+ GGAGCACTAATTCCACCAGCAGCAGTGCCACTTGCAGACAGATTAGTGAAATTAGTTGAA
JMSF043F04+ CCACCAGCAGCAGTGCCACTTGCAGACAGATTAGTGAAATTAGTTGAA
____________________________________________________________
consensus GGAGCACTAATTCCACCAGCAGCAGTGCCACTTGCAGACAGATTAGTGAAATTAGTTGAA
. : . : . : . : . : . :
JMSF044F09+ ATTGAGCTGGAGCTCACAGTTACACTGGTGCCTGAACTGTCAAGGGAACTTCTTGAGAGT
JMSF043F04+ ATTGAGCTGGAGCTCACAGTTACACTGGTGCCTGAACTGTCAAGGGAACTTCTTGAGAGT
____________________________________________________________
consensus ATTGAGCTGGAGCTCACAGTTACACTGGTGCCTGAACTGTCAAGGGAACTTCTTGAGAGT
. : . : . : . : . : . :
JMSF044F09+ ATACTCCATTTCTCAATTTCATCATCTTGAACCTCACCATCTTTGGAAATCAGAGGTAGC
JMSF043F04+ ATACTCCATTTCTCAATTTCATCATCTTGAACCTCACCATCTTTGGAAATCAGAGGTAGC
____________________________________________________________
consensus ATACTCCATTTCTCAATTTCATCATCTTGAACCTCACCATCTTTGGAAATCAGAGGTAGC
. : . : . : . : . : . :
JMSF044F09+ CTCAACCTTTGAGCAGCTTCTGCAACTACCATCCGATGCTCAAGAGCTTCATAAACCTGA
JMSF043F04+ CTCAACCTTTGAGCAGCTTCTGCAACTACCATCCGATGCTCAAGAGCTTCATAAACCTGA
____________________________________________________________
consensus CTCAACCTTTGAGCAGCTTCTGCAACTACCATCCGATGCTCAAGAGCTTCATAAACCTGA
. : . : . : . : . : . :
JMSF044F09+ GGAGGATTTTTCAAACCGATCTGAGGGTAGTGGCCCTGAACGTCTCGAATACCACCAAGA
JMSF043F04+ GGAGGATTTTTCAAACCGATCTGAGGGTAGTGGCCCTGAACGTCTCGAATACCACCAAGA
____________________________________________________________
consensus GGAGGATTTTTCAAACCGATCTGAGGGTAGTGGCCCTGAACGTCTCGAATACCACCAAGA
. : . : . : . : . : . :
JMSF044F09+ TTCACCACAGAAAGAGCTTGCTGATATTCTTCCACCATCCCAACTGCTTCTATGTAAACT
JMSF043F04+ TTCACCACAGAAAGAGCTTGCTGATATTCTTCCACCATCCCAACTGCTTCTATGTAAACT
____________________________________________________________
consensus TTCACCACAGAAAGAGCTTGCTGATATTCTTCCACCATCCCAACTGCTTCTATGTAAACT
. : . : . : . : . : . :
JMSF044F09+ GCCAACGCTTCCAAATATTGCTGTCGCTCCTTCGTCATCTCCTCCCTCGCGAGTTGGAGA
JMSF043F04+ GCCAACGCTTCCAAATATTGCTGTCGCTCCTTCGTCATCTCCTCCCTCGCGAGTTGGAGA
JMSF040O10+ CCAACGCTTCCAAATATCGCTATCGCTCATTCGTCATCTCCTCCCTCGCGAGTTGGAGA
JMFF046J23+ TCCAAATATCGCTGTCGCTCTTTCGTCATCTCCTCCCTCGCGAGTTGGAGA
____________________________________________________________
consensus GCCAACGCTTCCAAATATTGCTGTCGCTCCTTCGTCATCTCCTCCCTCGCGAGTTGGAGA
. : . : . : . : . : . :
JMSF044F09+ TCATAGTAGGTGGCTTTGGAAATGAGAGAACCATCGGGAGCTAAGCAGTGGCGCTCTAGT
JMSF043F04+ TCATAGTAGGTGGCTTTGGAAATGAGAGAACCATCGGGAGCTAAGCAGTGGCGCTCTAGT
JMSF040O10+ TCACAGTAGGTGGATTTGGAAATGAGAGAACCATCGGGAGCTAAGCAGTGGCGCTCTAGT
JMFF046J23+ TCACAGTAGGTGGATTGNGAAATGAGAGAACCATCGGGAGCTAAGCAGTGGCGCTCTAGT
JMFF007G10+ TAGT
____________________________________________________________
consensus TCATAGTAGGTGGCTTTGGAAATGAGAGAACCATCGGGAGCTAAGCAGTGGCGCTCTAGT
. : . : . : . : . : . :
JMSF044F09+ TGGTCGATCAACTGAGTAACATCCGCCGACAGGTTGTGAGCTCCGGCGCCGAGTTCCTTC
JMSF043F04+ TGGTCGATCAACTGAGTAACATCCGCCGACAGGTTGTGAGCTCCGGCGCCGAGTTCCTTC
JMSF040O10+ TGGTCGATCAACTGAGTAACATCCGCTGGCAGGTTGTGAGCGCCGGCGCCGAGTTCCTTC
JMFF046J23+ TGGTCGATCAACTGAGTAACATCCGCTGGCAGGTTGTGAGCGCCGGCGCCGAGTTCCTTC
JMFF009K20+ TGGTCGATCAACTGAGTAACATCCGCTGGCAGGTTGTGAGCGCCGGCGCCGAGTTCCTTC
JMFF007G10+ TGGTCGATCAACTGAGTAACATCCGCTGGCAGGTTGTGAGCGCCGGCGCCGAGTTCCTTC
____________________________________________________________
consensus TGGTCGATCAACTGAGTAACATCCGCTGGCAGGTTGTGAGCGCCGGCGCCGAGTTCCTTC
. : . : . : . : . : . :
JMSF044F09+ ACCATTTTTCGACCAACAACCAATCT
JMSF043F04+ ACCATTTTTCGACCAACAACCAATCTACACAAACT
JMSF040O10+ ACCATTTTTCGACCAACAATCAATCTACGCGAACTGTTGCAACTTCAATTTCATTTCAAA
JMSF007B04+ TACGCAAACTGTTGCAACTTCAA-TTCATTTCAAA
JMFF046J23+ ACCATTTTTCGACCAACAATCAATCTACGCAAACTGTTGCAACTTCAATTTCATTTCAAA
JMFF009K20+ NCCATTTTTNGACCAACAATCAATTTACGCAAACTGTTGCAACTTCAATTTCATTTCAAA
JMFF007G10+ ACCATTTTTNGACCAACAATCAATTTACGCAAACTGTTGCAACTTCAATTTCATTTCAAA
____________________________________________________________
consensus ACCATTTTTCGACCAACAATCAATCTACGCAAACTGTTGCAACTTCAATTTCATTTCAAA
. : . : . : . : . : . :
JMSF040O10+ ATAATTGCTGAATCGACCCAGATTTGAACAGAAGGGTTTGGANGTCTATCTTCC------
JMSF007B04+ ATAATTGCTGAATCGACCCAGATTTGAACAGAAGGGTTTGGATGTCTATCTTCCCTTTCA
JMFF046J23+ ATAATTGCTGAATCGACCCAGATTTGAACAGAAGGGTTTGGATGTCTATCTTCCCTTTCA
JMFF009K20+ ATAATTGNTGAATCGACCCAGATTTGAACAGAAGGGTTTGGATGTNTATNTTCCCTTTCA
JMFF007G10+ ATAATTGCTGAATCGACCCAGATTTGAACAGAAGGGTTTGGATGTNTATNTTCCCTTTCA
____________________________________________________________
consensus ATAATTGCTGAATCGACCCAGATTTGAACAGAAGGGTTTGGATGTCTATCTTCCCTTTCA
. : . : . : . : . : . :
JMSF040O10+ -------------CTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTCTGAGGAA
JMSF007B04+ AAATTGTTGATAGCTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTCTGAGGAA
JMFF046J23+ AAATTGTTGATAGCTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTCTGAGGAA
JMFF009K20+ AAATTGTTGATAGCTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTTTGAGGAA
JMFF007G10+ AAATTGTTGATAGCTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTTTGAGGAA
____________________________________________________________
consensus AAATTGTTGATAGCTGGTTGTGGCTTGTGGAGACTCCCGACTGGAGTATGCTCTGAGGAA
. : . : . : . : . : . :
JMSF040O10+ CGTCGGCGGGCCGGCAGCAGCACTTCGCGGTGGACTNGGAGCCTGGCGGTGGTCT
JMSF007B04+ CGTCGGCGGGCCGGCAGCAGCACTTCGCGGTGGACTTGGAGCCTGGCGGTGGTCTATGAC
JMFF046J23+ CGTCGGCGGGCCGGCAGCAGCACTTCGCGGTGGACTTGGAGCCTGGCGGTGGTCTATGAC
JMFF009K20+ CGTCGGCGGGCCGGCAGCAGCNCTTCGCGGTGGACTTGGAGCCTGGCGGTGGTNTATGAC
JMFF007G10+ CGTCGGCGGGCCGGCAGCAGCNCTTCGCGGTGGACTTGGAGCCTGGCGGTGGTNTATGAC
____________________________________________________________
consensus CGTCGGCGGGCCGGCAGCAGCACTTCGCGGTGGACTTGGAGCCTGGCGGTGGTCTATGAC
. : . : . : . : . : . :
JMSF007B04+ TGTGAGACTGACGGTGGCCTGAGGAATGGCGGATGGGTGTCAGACGGTGGTCCGTGACTC
JMFF046J23+ TGTGAGACTGACGGTGGCCTGAGGAATGGCGGATGGGTGTCAGACGGTGGTCCGTGACTC
JMFF009K20+ TGTGAGACTGACGGTGGCCTGAGGAATGGCGGATGGGTGTCAGACGGTGGTCCGTGACTC
JMFF007G10+ TGTGAGACTGACGGTGGCCTGAGGAATGGCGGATGGGTGTCAGACGGTGGTCCGTGACTC
____________________________________________________________
consensus TGTGAGACTGACGGTGGCCTGAGGAATGGCGGATGGGTGTCAGACGGTGGTCCGTGACTC
. : . : . : . : . : . :
JMSF007B04+ CGGCGATCTCTTTGGGTTTCCC
JMFF046J23+ CGGCGATCTCTTTGGGTTTCCCGGCGTGGTGGCGAGAGGATGTGAATGCCTTAT
JMFF009K20+ CGGCGATNTNTTTGGGTTTCCCGGCGTGGTGGCGAGAGGATGTGAATGCCTTATAGGACC
JMFF007G10+ CGGCGATNTNTTTGGGTTTCCCGGCGTGGTGGCGAGAGGATGTGAATGCCTTATAGGNCC
____________________________________________________________
consensus CGGCGATCTCTTTGGGTTTCCCGGCGTGGTGGCGAGAGGATGTGAATGCCTTATAGGACC
. : . : . : . : . : . :
JMFF009K20+ TCCTCACGGGTTTAACCCCTNTTNTTGTAGCCAAAAAAAAAATAATAAAAAAAATTGGAT
JMFF007G10+ TCCTCNCGGGTTTAACCCCTNTTNTTGTAGCCAAAAAAAAAATAATAAAAAAAATTGGAT
____________________________________________________________
consensus TCCTCACGGGTTTAACCCCTNTTNTTGTAGCCAAAAAAAAAATAATAAAAAAAATTGGAT