Contig 001578:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006N13Sequence483001578 (7)ref|XP_006352525.1|8e-20PREDICTED: ethylene-responsive transcription factor 3-like [Solanum tuberosum]571001578 (7)ref|XP_009770784.1|9e-33PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestri
JMFF050M06Sequence569001578 (7)ref|XP_009770784.1|4e-23PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestri601001578 (7)ref|XP_009770784.1|3e-21PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestri
JMFN005N20Sequence617001578 (7)ref|XP_009770784.1|2e-40PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestri
JMFN037P15Sequence610001578 (7)gb|AET99099.1|2e-26ethylene response factor 2 [Solanum tuberosum]
JMFN041J02Sequence630001578 (7)gb|AET99099.1|1e-25ethylene response factor 2 [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF050M06-                                           TCCATCGCCGGCGGCAGGTTGAGATCG
rJMFF006N13-                GCTGTGGAGTGAANATCGCAGACGTCATCCATCGCCGGCGGNAGGTTGAGATCG
JMFN005N20+                                            TCCATCGCCGGCGGCAGGTTGAGATCG
                      ____________________________________________________________
consensus                   GCTGTGGAGTGAANATCGCAGACGTCATCCATCGCCGGCGGCAGGTTGAGATCG
 
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rJMFF050M06-          AAACACAATGGTTTTCTGAAAGACGATGAAGCGATGTTTTCACAGTCCCCGTCGTCGACA
rJMFF006N13-          AAACACNATGGTTTTCTGAAAGACGATGAANCGATGTTTTCACAGTCCCCGTCGTCGACA
JMFN005N20+           AAACACAATGGTTTTCTGAAAGACGATGAAGCGATGTTTTCACAGTCCCCGTCGTCGACA
                      ____________________________________________________________
consensus             AAACACAATGGTTTTCTGAAAGACGATGAAGCGATGTTTTCACAGTCCCCGTCGTCGACA
 
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rJMFF050M06-          ACAGACGACGAAGAATCGCAGTCGCTATGACAATCATCCGGAGCTATTGGAGGCGACCTC
rJMFF006N13-          ACAGACGACGAATAATCGCAGTCGCTATGACAATCATCCGGAGCTATTGGAGGCGACCTC
JMFN005N20+           ACAGACGACGAAGAATCGCAGTCGCTATGACAATCATCCGGAGCTATTGGAGGCGACCTC
                      ____________________________________________________________
consensus             ACAGACGACGAAGAATCGCAGTCGCTATGACAATCATCCGGAGCTATTGGAGGCGACCTC
 
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rJMFF050M06-          GGGTGGCGGCGATTAGGCGTCGCCGCCGTCTGCGGCGGCGGAGGCGGCCTTGGCCCACTG
rJMFF006N13-          GGGTGGCGGNGATTAGGCGTCGCCGCCGNCTGCGGCGGCGGAGGCGGCCTTGGCCCACTG
JMFN005N20+           GGGTGGCGGCGATTAGGCGTCGCCGCCGTCTGCGGCGGCGGAGGCGGCCTTGGCCCACTG
JMFN037P15+                                            GGCGGCGGAGGCGGCCTTGGCCCACTG
JMFN041J02+                              TCGCCGCCGTCTGCGGCGGCGGAGGCGGCCTTGGCCCACTG
                      ____________________________________________________________
consensus             GGGTGGCGGCGATTAGGCGTCGCCGCCGTCTGCGGCGGCGGAGGCGGCCTTGGCCCACTG
 
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rJMFF050M06-          AAAGACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCGTA
rJMFF006N13-          AAANACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCNTA
JMFN005N20+           AAAGACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCGTA
JMFN037P15+           AAAGACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCGTA
JMFN041J02+           AAAGACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCGTA
JMFF050M06+                                                            GGGAAATCGTA
                      ____________________________________________________________
consensus             AAAGACTCCACCGTGCTACTCATGCTGCTGGAGGCGGGTCGGGGTCTCTGGGAAATCGTA
 
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rJMFF050M06-          TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
rJMFF006N13-          TGANGATCCTGACCGTGCATCAAGGAACCGATGAACGGATTTTTAAGGATTGAGGTCTGG
JMFN005N20+           TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
JMFN037P15+           TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
JMFN041J02+           TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
JMFF050M06+           TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
JMFF006N13+                                                                    TGG
                      ____________________________________________________________
consensus             TGAGGATCCTGACCGTGCATCAGGGAACCGATGAACGGATTTTTAGGGATTGAGGTCTGG
 
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rJMFF050M06-          TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
rJMFF006N13-          TTGTAAGGANGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
JMFN005N20+           TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
JMFN037P15+           TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
JMFN041J02+           TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
JMFF050M06+           TNGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
JMFF006N13+           TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
                      ____________________________________________________________
consensus             TTGTAAGGAGGTAGTTGAGAAGTCGCCGGAGGTGGGAAGTTGGTCTTGGCTTTCGGGCCT
 
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rJMFF050M06-          TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
rJMFF006N13-          TTTAGTTTCCTGGCGGCGGCGTCTNATGCTCGAGCGGCTTCCTCGGNGNANAGANAGGTC
JMFN005N20+           TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
JMFN037P15+           TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
JMFN041J02+           TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
JMFF050M06+           TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
JMFF006N13+           TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
                      ____________________________________________________________
consensus             TTTAGTTTCCTGGCGGCGGCGTCGTATGCTCGAGCGGCTTCCTCGGCGGAGAGAAAGGTC
 
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rJMFF050M06-          CCCAGCCATAGACGGGTCTTCTTCA                                   
rJMFF006N13-          CCCANNCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCNAATTTACCCCAN
JMFN005N20+           CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
JMFN037P15+           CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
JMFN041J02+           CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
JMFF050M06+           CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
JMFF006N13+           CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
                      ____________________________________________________________
consensus             CCCAGCCATAGACGGGTCTTCTTCAACGGGTCTCTGATCTCGGCCGCGAATTTACCCCAC
 
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rJMFF006N13-          GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTA                        
JMFN005N20+           GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGAT       
JMFN037P15+           GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGATGGCACCT
JMFN041J02+           GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGATGGCACCT
JMFF050M06+           GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGATGGCACCT
JMFF006N13+           GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGATGGCACCT
                      ____________________________________________________________
consensus             GCTCTCTTTCTAACCCCGCGGAATCTTACCTCTTTAAGCTCACCGGATCCGATGGCACCT
 
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JMFN037P15+           CCGGCGGCGGCGGCGGCTGCTCTGCCTCTGGCCATCACCCAAAGCCAAAGAACAAACTCA
JMFN041J02+           CCGGCGGCGGCGGCGGCTGCTCTGCCTCTGGCCATCACCCAAAGCCAAAGAACAAACTCA
JMFF050M06+           CCGGCGGCGGCGGCGGCTGCTCTGCCTCTGGCCATCACCCAAAGCCAAAGAACAAGCTCA
JMFF006N13+           CCGGCGGCGGCGGCGGCTGCTCTGCCTCTGGCCATCACCCAAAGCCAAAGAACAAGCTCA
                      ____________________________________________________________
consensus             CCGGCGGCGGCGGCGGCTGCTCTGCCTCTGGCCATCACCCAAAGCCAAAGAACAAGCTCA
 
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JMFN037P15+           GATTATGAAAACAAAGATATAATCAAGCATCCAGCGCCATAGAAGAAACTCTATGCTTTG
JMFN041J02+           GATTATGAAAACAAAGATATAATCAAGCATCCAGCGCCATAGAAGAAACTCTATGCTTTG
JMFF050M06+           GATTATGAAAACAAAGATATAATCAAGCATCCAGCGCCATAGAAGAAACTCTATGCTTTG
JMFF006N13+           GATTATGAAAACAAAGATATAATCAAGCATCCAGCGCCATAGAAGAAACTCTATGCTTTG
                      ____________________________________________________________
consensus             GATTATGAAAACAAAGATATAATCAAGCATCCAGCGCCATAGAAGAAACTCTATGCTTTG
 
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JMFN037P15+           CTTTGCTTCTTCTTCTTCTTCCTCCCCCCACTACAGTAAAACTCAGTTTCTGTCTCCGCC
JMFN041J02+           CTTTGCTTCTTCTTCTTCTTCCTCCCCCCACTACAGTAAAACTCAGTTTCTGTCTCCGCC
JMFF050M06+           CTTTGCTTCTTCTTCTTCTTCCTCCCCCCACTACAGTAAAACTCAGTTTCTGTCTCCGCC
JMFF006N13+           CTTTGCTTCTTCTTCTTCTTCCTCCCCCCACTACAGTAAAACTCAGTTTCTGTCTCCGCC
                      ____________________________________________________________
consensus             CTTTGCTTCTTCTTCTTCTTCCTCCCCCCACTACAGTAAAACTCAGTTTCTGTCTCCGCC
 
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JMFN037P15+           GTGCGCGGCGTTTGTGGATGAGTACCTAAGTAGAGACTAGAGA                 
JMFN041J02+           GTGCGCGGCGTTTGTGGATGAGTACCTAAGTAGAGACTAGAGA                 
JMFF050M06+           GTGCGCGGCGTTTGTGGATGAGTACCTAAGTAGAGACTAGAGAGAAGCTTTTAGATTGTG
JMFF006N13+           GTGCGCGGCGTTTGTGGATGAGTACCTAAGTAGAGACTAGAGAGAAGCTTTTAGATTGTG
                      ____________________________________________________________
consensus             GTGCGCGGCGTTTGTGGATGAGTACCTAAGTAGAGACTAGAGAGAAGCTTTTAGATTGTG