| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005L07 | Sequence | 305 | 001570 (12) | 682 | 001570 (12) | emb|CBI28036.3| | 2e-66 | unnamed protein product [Vitis vinifera] | |||
| JMFF035J22 | Sequence | 356 | 001570 (12) | 563 | 001570 (12) | emb|CBI28036.3| | 3e-84 | unnamed protein product [Vitis vinifera] | |||
| JMFF045G14 | Sequence | 627 | 001570 (12) | emb|CDP03299.1| | 2e-34 | unnamed protein product [Coffea canephora] | 630 | 001570 (12) | emb|CBI28036.3| | 1e-73 | unnamed protein product [Vitis vinifera] |
| JMFF049B21 | Sequence | 626 | 001570 (12) | emb|CDP03299.1| | 2e-34 | unnamed protein product [Coffea canephora] | 607 | 001570 (12) | emb|CBI28036.3| | 3e-87 | unnamed protein product [Vitis vinifera] |
| JMFF051A17 | Sequence | 562 | 001570 (12) | emb|CDP03299.1| | 8e-35 | unnamed protein product [Coffea canephora] | |||||
| JMFN006K08 | Sequence | 617 | 001570 (12) | emb|CDP03299.1| | 1e-71 | unnamed protein product [Coffea canephora] | |||||
| JMFN009O20 | Sequence | 625 | 001570 (12) | emb|CBI28036.3| | 1e-64 | unnamed protein product [Vitis vinifera] | |||||
| JMFN039G19 | Sequence | 481 | 001570 (12) | ref|XP_009771095.1| | 1e-45 | PREDICTED: auxin-responsive protein IAA8-like, partial [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN009O20+ GCAAATAAGTAA
rJMFF005L07- TAGAAGACGACAACGACAACAAAAGCCTTGATGAAGCAAATAAGTAA
____________________________________________________________
consensus TAGAAGACGACAACGACAACAAAAGCCTTGATGAAGCAAATAAGTAA
. : . : . : . : . : . :
JMFN039G19+ AAAGCTTAAGATCAGAGTTATT
JMFN009O20+ GAATACATTCTGGGAATTTAAGGAAAAGCATACCTATGAAAGCTTAAGATCAGAGTTATT
rJMFF005L07- GAATACATTCTGGGAATTTAAGGAAAAGCATACCTATGAAAGCTTAAGATCAGAGTTATT
____________________________________________________________
consensus GAATACATTCTGGGAATTTAAGGAAAAGCATACCTATGAAAGCTTAAGATCAGAGTTATT
. : . : . : . : . : . :
JMFN039G19+ CTGAATACGAATTCGAGGTTTTTAATTACTGGAGAGTTGTCCCTTTTTTTTTCAGTTTAC
JMFN009O20+ CTGAATACGAATACGAGGTTTTTAATTACTGGAGAGTTGTCCCTTTTTTTTTCAGTTTAC
rJMFF005L07- CTGAATACGAATACGAGGTTTTTAATTACTGGAGAGTTGTCCCTTTTTTTTTCAGTTTAC
rJMFF045G14- TTTTTTTTTCGGTTTAC
rJMFF049B21- GTTTAC
____________________________________________________________
consensus CTGAATACGAATACGAGGTTTTTAATTACTGGAGAGTTGTCCCTTTTTTTTTCAGTTTAC
. : . : . : . : . : . :
JMFN039G19+ TAGGTTGACATGGAATATTTGTAGCTACACAATCTTATAGAACACCAA-CTTCAAATGCA
JMFN009O20+ TAGGTTGACATGGAATATTTGTAGCTACACAAACTTATAGAACACCAA-CTTCAAATGCA
rJMFF005L07- TAGGTTGACATGGAATATTTGTAGCTACACAAACTTATAGAACACCAA-CTTCAAATGCA
rJMFF045G14- TAGGTTGACATGGAATATTTGTAGCTACACAAACTTATAGAACACCAA-CTTCAAATGCA
rJMFF035J22- TTTGTAGCTACACAAACTTATAGAACACCAAGCTTCAAATGCA
rJMFF049B21- TAGGTTGACATGGAATATTTGTAGCTACACAAACTTATAGAACACCAA-CTTCAAATGCA
____________________________________________________________
consensus TAGGTTGACATGGAATATTTGTAGCTACACAAACTTATAGAACACCAA-CTTCAAATGCA
. : . : . : . : . : . :
JMFN039G19+ AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
JMFN009O20+ AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
rJMFF005L07- AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
rJMFF045G14- AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
rJMFF035J22- AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
rJMFF049B21- AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
____________________________________________________________
consensus AATCAAGGCTTCGTTCCCGAATGTTGTTGTTCCACTTGCATTTCTTTTAACCGTTTTTGC
. : . : . : . : . : . :
JMFN039G19+ ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
JMFN009O20+ ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
rJMFF005L07- ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
rJMFF045G14- ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
rJMFF035J22- ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
rJMFF049B21- ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
____________________________________________________________
consensus ACTTCTCCAGGGCCGCTCTGGGAGCTAGACCGACAGCATCTGAACTCTTCATGATCCTTA
. : . : . : . : . : . :
JMFN039G19+ GACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
JMFN009O20+ GACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
rJMFF005L07- NACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
rJMFF045G14- GACGCTTGC-AGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
rJMFF035J22- GACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
rJMFF049B21- GACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
____________________________________________________________
consensus GACGCTTGCAAGAGTCTACAAACATTTCCCATGGAAGATCACCGACAAGCATCCAGTCAC
. : . : . : . : . : . :
JMFN039G19+ CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
JMFN009O20+ CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
rJMFF005L07- CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
rJMFF045G14- CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
rJMFF035J22- CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
rJMFF049B21- CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
____________________________________________________________
consensus CGTCTTTGTCTTCAAAGGTAAGTACATATTCGGAACCATGCAGATCCATCAATCTACCTT
. : . : . : . : . : . :
JMFN039G19+ CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
JMFN009O20+ CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
rJMFF005L07- CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
rJMFF045G14- CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
rJMFF035J22- CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
rJMFF049B21- CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
____________________________________________________________
consensus CACTCAATCCATCTCGGATAGGAACACCCGGAGATCCCGATTGACCGATGGTAAAACAGC
. : . : . : . : . : . :
JMFN039G19+ TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCA
JMFN009O20+ TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
rJMFF005L07- TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
rJMFF045G14- TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
rJMFF035J22- TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
rJMFF049B21- TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
JMFN006K08+ AGCAGTCGTAAATCTTAAGGTCAA
____________________________________________________________
consensus TAAACATCTTCTCGAGAGCCAAAGTGAGATCCTTATAGCAGTCGTAAATCTTAAGGTCAA
. : . : . : . : . : . :
JMFN009O20+ CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
rJMFF005L07- CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
rJMFF045G14- CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
rJMFF035J22- CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
rJMFF049B21- CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
JMFN006K08+ CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
____________________________________________________________
consensus CTTTTCTCAGGTACGGGGCGCCATCCATGCTGACTTTGACATAGAGACAACCCGACCCCG
. : . : . : . : . : . :
JMFN009O20+ ACTTCCCATCGGGA
rJMFF005L07- ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGAT
rJMFF045G14- ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGATTAGTAACCATCGAATTCTTACGAA
rJMFF035J22- ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGATTAGTAACCATCGAATTCTTACGAA
rJMFF049B21- ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGATTAGTAACCATCGAATTCTTACGAA
JMFN006K08+ ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGATTAGTAACCATCGAATTCTTACGAA
____________________________________________________________
consensus ACTTCCCATCGGGACCTTCTTCGGTCTTGGGAGGATTAGTAACCATCGAATTCTTACGAA
. : . : . : . : . : . :
rJMFF045G14- AAGATCGAATCGGGGGCCATCCTACCACCTGTGCCTTTGCAGCAGAAACCTGAGGCTTTT
rJMFF035J22- AAGATCGAATCGGGGGCCATCCTACCACCTGTGCCTTTGC
rJMFF049B21- AAGATCGAATCGGGGGCCATCCTACCACCTGTGCCTTTGCAGCAGAAACCTGAGGCTTTT
JMFN006K08+ AAGATCGAATCGGGGGCCATCCTACCACCTGTGCCTTTGCAGCAGAAACCTGAGGCTTTT
JMFF049B21+ TTGCAGCAGAAACCTGAGGCTTTT
JMFF051A17+ GCAGCAGAAACCTGAGGCTTTT
JMFF045G14+ TTGCAGCAGAAACCTGAGGCTTTT
____________________________________________________________
consensus AAGATCGAATCGGGGGCCATCCTACCACCTGTGCCTTTGCAGCAGAAACCTGAGGCTTTT
. : . : . : . : . : . :
rJMFF045G14- TC
rJMFF049B21- TC
JMFN006K08+ TCTCCTCCTCTTTGATAAGAGTGGAAGCCATGGAAGACTGGAGAGTGTTAGTTTCAGGAG
JMFF049B21+ TCTCCTCCTCTTTGATAAGAGTGGAAGCCATGGAAGACTGGAGAGTGTTAGTTTCAGGAG
JMFF051A17+ TCTCCTCCTCTTGNATAAGAGTGGAAGCCATGGAAGACTGGAGAGTGTTAGTTTCAGGAG
JMFF045G14+ TCTCCTCCTCTTTGATAAGAGTGGAAGCCATGGAAGACTGGAGAGTGTTAGTTTCAGGAG
____________________________________________________________
consensus TCTCCTCCTCTTTGATAAGAGTGGAAGCCATGGAAGACTGGAGAGTGTTAGTTTCAGGAG
. : . : . : . : . : . :
JMFN006K08+ CAAGGATCTTGGCACCTCCATTGACACCCCTAGGGGAAAACAAGGCTCCACCTTTAGGCA
JMFF049B21+ CAAGGATCTTGGCACCTCCATTGACACCCCTAGGGGAAAACAAGGCTCCACCTTTAGGCA
JMFF051A17+ CAAGGATCTTGGCACCTCCATTGACACCCCTAGGGGAAAACAAGGCTCCACCTTTAGGCA
JMFF045G14+ CAAGGATCTTGGCACCTCCATTGACACCCCTAGGGGAAAACAAGGCTCCACCTTTAGGCA
____________________________________________________________
consensus CAAGGATCTTGGCACCTCCATTGACACCCCTAGGGGAAAACAAGGCTCCACCTTTAGGCA
. : . : . : . : . : . :
JMFN006K08+ AGTCAGCCTCAGATCCACCAGTTGCAGAGAAAACCCACTTCTCAGAACCACCATTAATGG
JMFF049B21+ AGTCAGCCTCAGATCCACCAGTTGCAGAGAAAACCCACTTCTCAGAACCACCATTAATGG
JMFF051A17+ AGTCAGCCTCAGATCCACCAGTTGCAGAGAAAACCCACTTCTCAGAACCACCATTAATGG
JMFF045G14+ AGTCAGCCTCAGATCCACCAGTTGCAGAGAAAACCCACTTCTCAGAACCACCATTAATGG
____________________________________________________________
consensus AGTCAGCCTCAGATCCACCAGTTGCAGAGAAAACCCACTTCTCAGAACCACCATTAATGG
. : . : . : . : . : . :
JMFN006K08+ TGTCAGAGAACCCCCTCTTGGCCCCCAAAACCCCACTCTTCTCCTCCACCACCAGAGTCC
JMFF049B21+ TGTCAGAGAACCCCCTCTTGGCCCCCAAAACCCCACTCTTCTCCTCCACCACCAGAGTCC
JMFF051A17+ TGTCAGAGAACCCCCTCTTGGCCCCCAAAACCCCACTCTTCTCCTCCACCACCAGAGTCC
JMFF045G14+ TGTCAGAGAACCCCCTCTTGGCCCCCAAAACCCCACTCTTCTCCTCCACCACCAGAGTCC
____________________________________________________________
consensus TGTCAGAGAACCCCCTCTTGGCCCCCAAAACCCCACTCTTCTCCTCCACCACCAGAGTCC
. : . : . : . : . : . :
JMFN006K08+ CATTCTCTCTCTCTGGGGACTCAGAACCAGGCAACCCCAGTCTCAGTTCAGTGGCCTTCA
JMFF049B21+ CATTCTCTCTCTCTGGGGACTCAGAACCAGGCAACCCCAGTCTCAGTTCAGTGGCCTTCA
JMFF051A17+ CATTCTCTCTCTCTGGGGACTCAGAACCAGGCAACCCCAGTCTCAGTTCAGTGGCCTTCA
JMFF045G14+ CATTCTCTCTCTCTGGGGACTCAGAACCAGGCAACCCCAGTCTCAGTTCAGTGGCCTTCA
____________________________________________________________
consensus CATTCTCTCTCTCTGGGGACTCAGAACCAGGCAACCCCAGTCTCAGTTCAGTGGCCTTCA
. : . : . : . : . : . :
JMFN006K08+ AGTTCAAACCTTTGGCCTTCCTCTCACTCTCAACAGAGGAAACACAGCTCTTCTCAGAGT
JMFF049B21+ AGTTCAAACCTTTGGCCTTCCTCTCACTCTCAACAGAGGAAACACAGCTCTTCTCAGAGT
JMFF051A17+ AGTTCAAACCTTTGGCCTTCCTCTCACTCTCAACAGAGGAAACACAGCTCTTCTCAGAGT
JMFF045G14+ AGTTCAAACCTTTGGCCTTCCTCTCACTCTCAACAGAGGAAACACAGCTCTTCTCAGAGT
____________________________________________________________
consensus AGTTCAAACCTTTGGCCTTCCTCTCACTCTCAACAGAGGAAACACAGCTCTTCTCAGAGT
. : . : . : . : . : . :
JMFN006K08+ TCTCCATTGAAGGAACCTCTGATAAGCCTATGTAATCATGCTCTTCCAAGGGT
JMFF049B21+ TCTCCATTGAAGGAACCTCTGATAAGCCTATGTAATCATGCTCTTCCAAGGGTGTAGACA
JMFF051A17+ TCTCCATTGAAGGAACCTCTGATAAGCCTATGTAATCATGCTCTTCCAAGGGTGTAGACA
JMFF045G14+ TCTCCATTGAAGGAACCTCTGATAAGCCTATGTAATCATGCTCTTCCAAGGGTGTAGACA
JMFF035J22+ CATTGAAGGAACCTNTGATAAGCCTATGTAATCATGCTNTTCCAAGGGNGTAGACA
JMFF005L07+ AGACA
____________________________________________________________
consensus TCTCCATTGAAGGAACCTCTGATAAGCCTATGTAATCATGCTCTTCCAAGGGTGTAGACA
. : . : . : . : . : . :
JMFF049B21+ TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
JMFF051A17+ TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
JMFF045G14+ TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
JMFF035J22+ TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
JMFF005L07+ TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
____________________________________________________________
consensus TCAAAGTTCAAAACAGTAGAGTTCAAGAATGTAAAAAAAAAAGAATGGTATTGAAATTGA
. : . : . : . : . : . :
JMFF049B21+ AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAACA
JMFF051A17+ AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAAC
JMFF045G14+ AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAACA
JMFF035J22+ AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAACA
JMFF005L07+ AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAACA
____________________________________________________________
consensus AAGACTCCTGAAATGATACAAGTAAAGCCAGATACTGATAGCATGTAAAACTCAAGAACA
. : . : . : . : . : . :
JMFF049B21+ CACTAATAAGAATGAGGTTTGTGTATTAGTAGTAGTATTTGATTGCAGTG
JMFF045G14+ CACTAATAAGAATGAGGTTTGTGTATTAGTAGTAGTATTTGATTGCAGTG
JMFF035J22+ CACTAATAAGAATGAGGTTTGTGTATTAGTAGTAGTATTTGATTGCAGTGGAGAAAAATA
JMFF005L07+ CACTAATAAGAATGAGGTTTGTGTATTAGTAGTAGTATTTGATTGCAGTGGAGAAAAATA
____________________________________________________________
consensus CACTAATAAGAATGAGGTTTGTGTATTAGTAGTAGTATTTGATTGCAGTGGAGAAAAATA
. : . : . : . : . : . :
JMFF035J22+ AATAAAAGAAGCTTCTTTTATTTCTATATAATCATGCCTTGCCTGATCCCTCTCCCCCCC
JMFF005L07+ AATAAAAGAAGCTTCTTTTATTTCTATATAATCATGCCTTGCCTGATCCCTCTCCCCCCC
____________________________________________________________
consensus AATAAAAGAAGCTTCTTTTATTTCTATATAATCATGCCTTGCCTGATCCCTCTCCCCCCC
. : . : . : . : . : . :
JMFF035J22+ TCTCTCTCTCTCTGAACTGTAGCAAAGAGTGGGATGAGCAGAGAAATGGAATAAGACAAC
JMFF005L07+ TCTCTCTCTCTCTGAACTGTAGCAAAGAGTGGGATGAGCAGAGAAATGGAATAAGACAAC
____________________________________________________________
consensus TCTCTCTCTCTCTGAACTGTAGCAAAGAGTGGGATGAGCAGAGAAATGGAATAAGACAAC