| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K13 | Sequence | 516 | 001566 (4) | ref|XP_011081220.1| | 2e-44 | PREDICTED: protein NRT1/ PTR FAMILY 6.3-like [Sesamum indicum] | 750 | 005407 (5) | ref|XP_009613364.1| | 7e-83 | PREDICTED: protein NRT1/ PTR FAMILY 6.3-like [Nicotiana tomentosiformis] |
| JMFF021L07 | Sequence | 541 | 001566 (4) | ref|XP_004244572.1| | 8e-59 | PREDICTED: protein NRT1/ PTR FAMILY 6.3-like [Solanum lycopersicum] | 680 | 005407 (5) | ref|XP_011463731.1| | 7e-74 | PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X2 [Fragaria vesca subsp. vesca |
| JMFS136F05 | Sequence | 605 | 001566 (4) | ref|XP_006358355.1| | 1e-74 | PREDICTED: nitrate transporter 1.1-like [Solanum tuberosum] | |||||
| JMSF025I16 | Sequence | 641 | 001566 (4) | ref|XP_006358355.1| | 6e-77 | PREDICTED: nitrate transporter 1.1-like [Solanum tuberosum] | 746 | 005407 (5) | ref|XP_004245746.1| | 3e-90 | PREDICTED: protein NRT1/ PTR FAMILY 6.3-like [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMFS136F05+ TCGAACTGGTCGGACCCGAAGCCGGA
JMSF025I16+ CTTGTCGCTCTCGTCGAACTGGTCGGACCCGAAGCCGGA
____________________________________________________________
consensus CTTGTCGCTCTCGTCGAACTGGTCGGACCCGAAGCCGGA
. : . : . : . : . : . :
JMFS136F05+ CACGCTGGACTTCAGGCCGCCGGTGCCCAGCGCCGTCAGGTAAAGGGCCGCGTAGAGGAC
JMSF025I16+ CACGCTGGACTTCAGGCCGCCGGTGCCCAGCGCCGTCAGGTAAAGGGCCGCGTAGAGGAC
____________________________________________________________
consensus CACGCTGGACTTCAGGCCGCCGGTGCCCAGCGCCGTCAGGTAAAGGGCCGCGTAGAGGAC
. : . : . : . : . : . :
JMFS136F05+ AAGCAGCTGGGCGCCGCTCGCCGGAATACATGCCGGGCTTCCCCGTTCACACTTTGGAGG
JMSF025I16+ AAGCAGCTGGGCGCCGCTCGCCGGAATACATGCCGGGCTTCCCCGTTCACACTTTGGAGG
JMFF021L07+ GG
____________________________________________________________
consensus AAGCAGCTGGGCGCCGCTCGCCGGAATACATGCCGGGCTTCCCCGTTCACACTTTGGAGG
. : . : . : . : . : . :
JMFS136F05+ CCTTAGGCTTGGTATTATTGTTGAGATTGTCAAAATAGTCACACCCGTCGCTTGAACAGT
JMSF025I16+ CCTTAGGCTTGGTATTATTGTTGAGATTGTCAAAATAGTCACACCCGTCGCTTGAACAGT
JMFF021L07+ CCTTAGGCTTGGTATTATTGTTGAGATTGTCAAAATAGTCACACCCGTCGCTTGAACAGT
JMFF004K13+ GATTGTCAAAATAGTCACACCCGTCGCTTGAACAGT
____________________________________________________________
consensus CCTTAGGCTTGGTATTATTGTTGAGATTGTCAAAATAGTCACACCCGTCGCTTGAACAGT
. : . : . : . : . : . :
JMFS136F05+ GGTAAAGATGGCGATTGTCAAGTACCTTCCGAGGAAAGTGTCAGCAATGAAGCCACCAAG
JMSF025I16+ GGTAAAGATGGCGATTGTCAAGTACCTTCCGAGGAAAGTGTCAGCAATGAAGCCACCAAG
JMFF021L07+ GGTAAAGATGGCGATTGTCAAGTACCTTCCGAGGAAAGTGTCAGCAATGAAGCCACCAAG
JMFF004K13+ GGTAAAGATGGCGATTGTCAAGTACCTTCCGAGGAAAGTGTCAGCAATGAAGCCACCAAG
____________________________________________________________
consensus GGTAAAGATGGCGATTGTCAAGTACCTTCCGAGGAAAGTGTCAGCAATGAAGCCACCAAG
. : . : . : . : . : . :
JMFS136F05+ GAGGGTGAGCATGAAGGAAGTTCCAAGAAAGTTAGTGACGTTATTGGCGGCGTTAGCATT
JMSF025I16+ GAGGGTGAGCATGAAGGAAGTTCCAAGAAAGTTAGTGACGTTATTGGCGGCGTTAGCATT
JMFF021L07+ GAGGGTGAGCATGAAGGAAGTTCCAAGAAAGTTAGTGACGTTATTGGCGGCGTTAGCATT
JMFF004K13+ GAGGGTGAGCATGAAGGAAGTTCCAAGAAAGTTAGTGACGTTATTGGCGGCGTTAGCATT
____________________________________________________________
consensus GAGGGTGAGCATGAAGGAAGTTCCAAGAAAGTTAGTGACGTTATTGGCGGCGTTAGCATT
. : . : . : . : . : . :
JMFS136F05+ CCCTAAATGCATGGTCCCCGTCAAGTAGGTCACAAGGTTGACGGCGATGCCCAACGTCGT
JMSF025I16+ CCCTAAATGCATGGTCCCCGTCAAGTAGGTCACAAGGTTGACGGCGATGCCCAACGTCGT
JMFF021L07+ CCCTAAATGCATGGTCCCCGTCAAGTAGGTCACAAGGTTGACGGCGATGCCCAACGTCGT
JMFF004K13+ CCCTAAATGCATGGTCCCCGTCAAGTAGGTCACAAGGTTGACGGCGATGCCCAACGTCGT
____________________________________________________________
consensus CCCTAAATGCATGGTCCCCGTCAAGTAGGTCACAAGGTTGACGGCGATGCCCAACGTCGT
. : . : . : . : . : . :
JMFS136F05+ CAACCTCTCAC-AAGCCTCAACCCCCAAAATCATGGCGGCGCTGCTCCAGCCGCCGGAGG
JMSF025I16+ CAACCTCTCAC-AAGCCTCAACCCCCAAAATCATGGCGGCGCTGCTCCAGCCGCCGGAGG
JMFF021L07+ CAACCTCTCAC-AAGCCTCAACCCCCAAAATCATGGCGGCGCTGCTCCAGCCGCCGGAGG
JMFF004K13+ CAACCTCTCACAAAGCCTCAACCCCCAAAATCATGGCGGCGCTGCTCCAGCCGCCGGAGG
____________________________________________________________
consensus CAACCTCTCAC-AAGCCTCAACCCCCAAAATCATGGCGGCGCTGCTCCAGCCGCCGGAGG
. : . : . : . : . : . :
JMFS136F05+ AGGAGCGGAGGGCGGGGCGGCCATGGAAGTCCCAGGCATCTGGGAGGATTTTTGCATCAT
JMSF025I16+ AGGAGCGGAGGGCGGGGCGGCCATGGAAGTCCCAGGCATCTGGGAGGATTTTTGCATCAT
JMFF021L07+ AGGAGCGGAGGGCGGGGCGGCCATGGAAGTCCCAGGCATCTGGGAGGATTTTTGCATCAT
JMFF004K13+ AGGAGCGGAGGGCGGGGCGGCCATGGAAGTCCCAGGCATCTGGGAGGATTTTTGCATCAT
____________________________________________________________
consensus AGGAGCGGAGGGCGGGGCGGCCATGGAAGTCCCAGGCATCTGGGAGGATTTTTGCATCAT
. : . : . : . : . : . :
JMFS136F05+ TTTTTGTTTGAGGAAATGCCATTATCAACAAGCTAAGGCTAAGTTTTAATAGAGATGGAA
JMSF025I16+ TTTTTGTTTGAGGAAATGCCATTATCAACAAGCTAAGGCTAAGTTTTAATAGAGATGGAA
JMFF021L07+ TTTTTGTTTGAGGAAATGCCATTATCAACAAGCTAAGGCTAAGTTTTAATAGAGATGGAA
JMFF004K13+ TTTTTGTTTGAGGAAATGCCATTATCAACAAGCTAAGGCTAAGTTTTAATAGAGATGGAA
____________________________________________________________
consensus TTTTTGTTTGAGGAAATGCCATTATCAACAAGCTAAGGCTAAGTTTTAATAGAGATGGAA
. : . : . : . : . : . :
JMFS136F05+ TAAGAGTGATGATATATATGGTTGAAGAAGCTCAGAAGAT
JMSF025I16+ TAAGAGTGATGATATATATGGTTGAAGAAGCTCAGAAGATAGAGACGACTTAAGTCTCAT
JMFF021L07+ TAAGAGTGATGATATATATGGTTGAAGAAGCTCAGAAGATAGAGACGACTTAAGTCTCAT
JMFF004K13+ TAAGAGTGATGATATATATGGTTGAAGAAGCTCAGAAGATAGAGACGACTTAAGTCTCAT
____________________________________________________________
consensus TAAGAGTGATGATATATATGGTTGAAGAAGCTCAGAAGATAGAGACGACTTAAGTCTCAT
. : . : . : . : . : . :
JMFF021L07+ GCAGATTCAATTCATCCAAGCAGCCCTTTTATAATGGTGGCCTAGCTTGGGCCCGGAGAT
JMFF004K13+ GCAGATTCAATTCATCCAAGCAGCCCTTTTATAATGGTGGCCTAGCTTGGGCCCGGAGAT
____________________________________________________________
consensus GCAGATTCAATTCATCCAAGCAGCCCTTTTATAATGGTGGCCTAGCTTGGGCCCGGAGAT