Contig 001565:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I16Sequence532001565 (4)gb|AAT02524.1|1e-10metallothionein 2a [Populus trichocarpa x Populus deltoides]511001565 (4)gb|AAT02524.1|1e-10metallothionein 2a [Populus trichocarpa x Populus deltoides]
JMFN028B11Sequence456001565 (4)ref|XP_003623087.1|4e-09F-box protein [Medicago truncatula]
JMFS112F11Sequence523001565 (4)gb|AAT02524.1|1e-10metallothionein 2a [Populus trichocarpa x Populus deltoides]

Alignment

This contig is upended


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JMFS112F11+                                                              TCGAGTTTT
                      ____________________________________________________________
consensus                                                                TCGAGTTTT
 
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JMFN028B11+                                                    ATAAGTACATATAGAAGCA
JMFS112F11+           TTTTTTTTTTTTTTGCATGTAATTATGGGCGATAACTTTATATAAGTGCATAGAGAAGCA
rJMFF004I16-                                                   ATAAGTGCATAGAGAAGCA
JMFF004I16+                                                    ATAAGTGCATAGAGAAGCA
                      ____________________________________________________________
consensus             TTTTTTTTTTTTTTGCATGTAATTATGGGCGATAACTTTATATAAGTGCATAGAGAAGCA
 
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JMFN028B11+           GAGACTCTGAGATCAACCTAACTCATAATAATATAAGTCAAAAAGAACAAACATACATAC
JMFS112F11+           GAGAGTCTGAGATCAACCAAACACATAATAATATAACTC-AAAAGAACAAACATACATAC
rJMFF004I16-          GAGAGTCTGAGATCAACCAAACACATAATAATATAACTC-AAAAGAACAAACATACATAC
JMFF004I16+           GAGAGTCTGAGATCAACCAAACACATAATAATATAACTC-AAAAGAACAAACATACATAC
                      ____________________________________________________________
consensus             GAGAGTCTGAGATCAACCAAACACATAATAATATAACTC-AAAAGAACAAACATACATAC
 
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JMFN028B11+           ACCACTACTCTTATTCCAGGCTAGCTAGCTAACTATGGGAACGGATATGCGGAATATATC
JMFS112F11+           ACCACTACTCTTATTCTAGGCTAGCTAGCTAGCTAGGGCAACGGATATGCGGCATATACC
rJMFF004I16-          ACCACTACTCTTATTCTAGGCTAGCTAGCTAGCTAGGGCAACGGATATGCGGCATATACC
JMFF004I16+           ACCACTACTCTTATTCTAGGCTAGCTAGCTAGCTAGGGCAACGGATATGCGGCATATACC
                      ____________________________________________________________
consensus             ACCACTACTCTTATTCTAGGCTAGCTAGCTAGCTAGGGCAACGGATATGCGGCATATACC
 
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JMFN028B11+           CTCTGATCTTCACTCACTCTTAATTCTCCGCCCTTTGTGTTAGTTGCAGGTGCAGGGGTC
JMFS112F11+           CTCTGATCTTCGCTCACTCTTAATTCTCCGGCCTTTGAGTTAGTTGCAGGTGCAGGGGTC
rJMFF004I16-          CTCTGATCTTCGCTCACTCTTAATTCTCCGGCCTTTGAGTTAGTTGCAGGTGCAGGGGTC
JMFF004I16+           CTCTGATCTTCGCTCACTCTTAATTCTCCGGCCTTTGAGTTAGTTGCAGGTGCAGGGGTC
                      ____________________________________________________________
consensus             CTCTGATCTTCGCTCACTCTTAATTCTCCGGCCTTTGAGTTAGTTGCAGGTGCAGGGGTC
 
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JMFN028B11+           GCATTGGCAAGTTGGCCCGCAATGGCATCCCTCCTTAGCTCCCATCACACATCCCTCACT
JMFS112F11+           GCATTGGCAGGCTGGCCCGCAATGGCATCCCTCCGCCGCTCCCATCACACATCCCTCATT
rJMFF004I16-          GCATTGGCAGGCTGGCCCGCAATGGCATCCCTCCGCCGCTCCCATCACACATCCCTCATT
JMFF004I16+           GCATTGGCAGGCTGGCCCGCAATGGCATCCCTCCGCCGCTCCCATCACACATCCCTCATT
                      ____________________________________________________________
consensus             GCATTGGCAGGCTGGCCCGCAATGGCATCCCTCCGCCGCTCCCATCACACATCCCTCATT
 
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JMFN028B11+           CTCCTTTTTCTGGGACGCAACGCCTTGAACAAGGGTCTGAGGCGTGGTTTTGGCGGTCTC
JMFS112F11+           CTCCTTTTTCTGGGGGGCGACGCCTTGAACAAGGGTCTGAGGCGTGGTTTTGGCGGTCTC
rJMFF004I16-          CTCCTTTTTCTGGGGGGCGACGCCTTGAACAAGGGTCTGAGGCGTGGTTTTGGCGGTCTC
JMFF004I16+           CTCCTTTTTCTGGGGGGCGACGCCTTGAACAAGGGTCTGAGGCGTGGTTTTGGCGGTCTC
                      ____________________________________________________________
consensus             CTCCTTTTTCTGGGGGGCGACGCCTTGAACAAGGGTCTGAGGCGTGGTTTTGGCGGTCTC
 
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JMFN028B11+           CGAAGAAGAGCTCAGGTCAGGGTACATCTTACACCCGCCGCAGTCGCTGCCGCACTTGCA
JMFS112F11+           C---GAAGAGCTCAGGTCAGGGTACATCTTACACCCGCCGCAGTCGCTGCCGCACTTGCA
rJMFF004I16-          C---GAAGAGCTCAGGTCAGGGTACATCTTACACCCGCCGCAGTCGCTGCCGCACTTGCA
JMFF004I16+           C---GAAGAGCTCAGGTCAGGGTACATCTTACACCCGCCGCAGTCGCTGCCGCACTTGCA
                      ____________________________________________________________
consensus             C---GAAGAGCTCAGGTCAGGGTACATCTTACACCCGCCGCAGTCGCTGCCGCACTTGCA
 
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JMFN028B11+           GGCAGAGCCGCAGCCACAGTTTCCTCCGCAGCAAGACA                      
JMFS112F11+           GGCAGAGCCGCAACCACAGTTTCCCCCGCAGCAAGACATGTTCAAAACGATACAAAAGCT
rJMFF004I16-          GGCAGAGCCGCAACCACAGTTTCCCCCGCAGCAAGACATGTTCAAAACGATACAAAAGCT
JMFF004I16+           GGCAGAGCCGCAACCACAGTTTCCCCCGCAGCAAGACATGTTCAAAACGATACAAAAGCT
                      ____________________________________________________________
consensus             GGCAGAGCCGCAACCACAGTTTCCCCCGCAGCAAGACATGTTCAAAACGATACAAAAGCT
 
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JMFS112F11+           TAGCTTGAAGATAATATATGAATATAACACAAGATGAA                      
rJMFF004I16-          TAGCTTGAAGATAATATATGAATATAACACAAGATGAAGATGAAGATGAAGATGTGATGT
JMFF004I16+           TAGCTTGAAGATAATATATGAATATAACACAAGATGAAGATGAAGATGAAGATGTGATGT
                      ____________________________________________________________
consensus             TAGCTTGAAGATAATATATGAATATAACACAAGATGAAGATGAAGATGAAGATGTGATGT