Contig 001563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D18Sequence252001563 (10)626001563 (10)
JMFF037G16Sequence506001563 (10)
JMFF048M17Sequence577001563 (10)511001563 (10)
JMFN014B11Sequence621001563 (10)
JMFN017H15Sequence617001563 (10)
JMFN032B21Sequence582001563 (10)ref|XP_003627732.1|1e-19ATP synthase subunit beta [Medicago truncatula]
JMFN041P09Sequence626001563 (10)
JMFS070F12Sequence627001563 (10)

Alignment

This contig is upended


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rJMFF048M17-                                  CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
                      ____________________________________________________________
consensus                                     CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
 
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JMFN032B21+                                        GCAGAATATATAAATAATGAACACTACAAGA
rJMFF048M17-          TTTTTATAAAAGGAAATTATTGTATAGAAGCAGAATATATAAATAATGAACACTACAAGA
rJMFF004D18-                                       GCAGAATATATAAATAATGAACACTACAAGA
                      ____________________________________________________________
consensus             TTTTTATAAAAGGAAATTATTGTATAGAAGCAGAATATATAAATAATGAACACTACAAGA
 
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JMFN032B21+           GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
rJMFF048M17-          GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCGATAAGGCAAA
rJMFF004D18-          GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
                      ____________________________________________________________
consensus             GTCATCTCAAACTACAGCAAAAGAATGAAAAAAGAAATATAATGAAGCCAATAAGGCAAA
 
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JMFN032B21+           TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF048M17-          TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF037G16-                ACGCCCGAAGTCGAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
rJMFF004D18-          TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
JMFN014B11+                                                            GTATAATTAAT
                      ____________________________________________________________
consensus             TCCTAAACGCCCGAAGTCAAAGTATCATTCCCCGTGCCATATCGAGAGTGTATAATTAAT
 
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JMFN032B21+           ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF048M17-          ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF037G16-          NTCTATATATCANAATCNTCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
rJMFF004D18-          ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
JMFN014B11+           ATCTATATATCAAAATCATCAACAATATGGTGATGGGTGCAATTTATTCTTGTATGGTCT
JMFN017H15+               ATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
JMFN041P09+                         ATCATCAACAATATGGTGATGGGTGNCAATTATTCTTGTATGGTCT
                      ____________________________________________________________
consensus             ATCTATATATCAAAATCATCAACAATATGGTGATGGGTTGCAATTATTCTTGTATGGTCT
 
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JMFN032B21+           CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF048M17-          CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF037G16-          CTAAAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
rJMFF004D18-          CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCACGT
JMFF048M17+                             CAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN014B11+           CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN017H15+           CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
JMFN041P09+           CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
                      ____________________________________________________________
consensus             CTAGAACTGAAGGCAGCTCAACACAGCCCATCCAATCACCAAGCTTCCCACCATGCTCGT
 
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JMFN032B21+           CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF048M17-          CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF037G16-          CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
rJMFF004D18-          CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFF048M17+           CACCTTCATGGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN014B11+           CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN017H15+           CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFN041P09+           CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
JMFS070F12+                             CTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
                      ____________________________________________________________
consensus             CACCTTCATTGCTCCACTCTGATCATTAAGGCCCGACGGAGAGGGAGAGATGGAGTCGGG
 
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JMFN032B21+           GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
rJMFF048M17-          GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
rJMFF037G16-          GTTANGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGNTGGAGC
rJMFF004D18-          GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFF048M17+           GTTAGGTCCGGGGGCTGGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN014B11+           GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN017H15+           GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFN041P09+           GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
JMFS070F12+           GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
                      ____________________________________________________________
consensus             GTTAGGTCCGGGGGCTTGGCTTGGAGGCGCAGGTGGGCTGAGCAATGCCGGAGTTGGAGC
 
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rJMFF048M17-          CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCG     
rJMFF037G16-          CTGANTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGNGCGGGAGA
rJMFF004D18-          CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFF048M17+           CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN014B11+           CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN017H15+           CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFN041P09+           CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
JMFS070F12+           CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
                      ____________________________________________________________
consensus             CTGAGTCGGAGCAGCGACGGGGACTTTAGCGGGGGGAGTTGCAAGTTCCGGGGCGGGAGA
 
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rJMFF037G16-          CTGCACGGGAGTGGCTGCCGGNGGANAGGATACCGGAGCCGAATCAGGTGAGGACAATGG
rJMFF004D18-          CTGCACGGGAGCGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFF048M17+           CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN014B11+           CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN017H15+           CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFN041P09+           CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
JMFS070F12+           CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
                      ____________________________________________________________
consensus             CTGCACGGGAGTGGCTGCCGGTGGAGAGGATACCGGAGCCGAAGCAGGTGAGGACAATGG
 
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rJMFF037G16-          TGTCTGGGCANGCGGGGATACAGGCGCGG-GGCCGGANCATTGGCCTGGGGANCGGAAAC
rJMFF004D18-          TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFF048M17+           TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN014B11+           TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN017H15+           TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFN041P09+           TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFS070F12+           TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
JMFF004D18+                                                           GGGAGCGGAAAC
                      ____________________________________________________________
consensus             TGTCTGGGCAGGCGGGGATACAGGCGCGGCGGCCGGAGCATTGGCCTGGGGAGCGGAAAC
 
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rJMFF037G16-          TGCNATACGTGGAGCCAAAGCAGGAGCCGGAGA                           
rJMFF004D18-          TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCC     
JMFF048M17+           TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN014B11+           TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN017H15+           TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFN041P09+           TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCTGCCGG
JMFS070F12+           TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
JMFF004D18+           TGCAATACGTGGANCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
                      ____________________________________________________________
consensus             TGCAATACGTGGAGCCAAAGCAGGAGCCGGAGATTCAGGCTTTGAAGGTGACGCCGCCGG
 
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JMFF048M17+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN014B11+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN017H15+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFN041P09+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFS070F12+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
JMFF004D18+           AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
                      ____________________________________________________________
consensus             AGGAGTCCCCGTCGTCGGCGCAGCAGAAGGCGCAGAAGCCGGAGACTGACCTCCGACGCC
 
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JMFF048M17+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATC        
JMFN014B11+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFN017H15+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFN041P09+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFS070F12+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
JMFF004D18+           GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
                      ____________________________________________________________
consensus             GGCAACTACGATGCACATAAACACCACCGCGATTCCAACCTTCGGATCCATCAGAGAGAA
 
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JMFN014B11+           ACAGAGAGGA                                                  
JMFN017H15+           ACAGAGAGGAGGTTTTGTTAC                                       
JMFN041P09+           ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGA                    
JMFS070F12+           ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGA                    
JMFF004D18+           ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGATGAAATAAGTTTTCGAGATC
                      ____________________________________________________________
consensus             ACAGAGAGGAGGTTTTGTTACAAAAACGAACAGAGAAAGATGAAATAAGTTTTCGAGATC