Contig 001561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C06Sequence544001561 (8)ref|XP_006358946.1|4e-80PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t785002528 (8)ref|XP_010277758.1|2e-05PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE
JMFF004B02Sequence532001561 (8)ref|XP_006358946.1|6e-61PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t777002528 (8)ref|XP_004251889.1|3e-04PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum]
JMFF004F20Sequence582001561 (8)ref|XP_006358946.1|5e-71PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t769002528 (8)ref|XP_004251889.1|1e-04PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum]
JMFF008L15Sequence612001561 (8)ref|XP_006358946.1|2e-74PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t723002528 (8)ref|XP_010277758.1|4e-04PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE
JMFF020B09Sequence594001561 (8)ref|XP_006358946.1|2e-73PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t771002528 (8)ref|XP_010277758.1|1e-04PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE
JMFF022K12Sequence459001561 (8)ref|XP_006358946.1|4e-43PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t724002528 (8)ref|XP_010277758.1|4e-04PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE
JMFN042H15Sequence610001561 (8)ref|XP_006358946.1|1e-99PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t
JMSF047P14Sequence683001561 (8)ref|XP_006358946.1|4e-108PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t726002528 (8)ref|XP_010277758.1|4e-05PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN042H15+ CGAATAGA
JMSF047P14+ CGAATAGA
                      ____________________________________________________________
consensus CGAATAGA
 
. : . : . : . : . : . :
JMFN042H15+ GCATACCCTTTAGACTANCCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
JMSF047P14+ GCATACCCTTTAGACTTACCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
                      ____________________________________________________________
consensus GCATACCCTTTAGACTTACCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
 
. : . : . : . : . : . :
JMFN042H15+ CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
JMFF001C06+ CCCC
JMSF047P14+ CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
                      ____________________________________________________________
consensus CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
 
. : . : . : . : . : . :
JMFN042H15+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMFF001C06+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMSF047P14+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMFF008L15+ CCCA
                      ____________________________________________________________
consensus ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
 
. : . : . : . : . : . :
JMFN042H15+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF001C06+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMSF047P14+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF008L15+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF020B09+ ATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF004F20+ GCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
                      ____________________________________________________________
consensus CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
 
. : . : . : . : . : . :
JMFN042H15+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF001C06+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMSF047P14+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF008L15+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF020B09+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF004F20+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF004B02+ TAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
                      ____________________________________________________________
consensus GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
 
. : . : . : . : . : . :
JMFN042H15+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF001C06+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMSF047P14+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF008L15+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF020B09+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF004F20+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF022K12+ TCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF004B02+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
                      ____________________________________________________________
consensus TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
 
. : . : . : . : . : . :
JMFN042H15+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF001C06+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMSF047P14+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF008L15+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF020B09+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF004F20+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF022K12+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF004B02+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
                      ____________________________________________________________
consensus GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
 
. : . : . : . : . : . :
JMFN042H15+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF001C06+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMSF047P14+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF008L15+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF020B09+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF004F20+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF022K12+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF004B02+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
                      ____________________________________________________________
consensus TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
 
. : . : . : . : . : . :
JMFN042H15+ CGAACAACTGTGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF001C06+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMSF047P14+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF008L15+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF020B09+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF004F20+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF022K12+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF004B02+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
                      ____________________________________________________________
consensus CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
 
. : . : . : . : . : . :
JMFN042H15+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF001C06+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMSF047P14+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF008L15+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF020B09+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF004F20+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF022K12+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF004B02+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
                      ____________________________________________________________
consensus TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
 
. : . : . : . : . : . :
JMFN042H15+ TC
JMFF001C06+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMSF047P14+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF008L15+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF020B09+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF004F20+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF022K12+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF004B02+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
                      ____________________________________________________________
consensus TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
 
. : . : . : . : . : . :
JMSF047P14+ AGAGAAGCTTAA
JMFF008L15+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF020B09+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF004F20+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF022K12+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF004B02+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
                      ____________________________________________________________
consensus AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
 
. : . : . : . : . : . :
JMFF008L15+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF020B09+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF004F20+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF022K12+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF004B02+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
                      ____________________________________________________________
consensus AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT