| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001C06 | Sequence | 544 | 001561 (8) | ref|XP_006358946.1| | 4e-80 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 785 | 002528 (8) | ref|XP_010277758.1| | 2e-05 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF004B02 | Sequence | 532 | 001561 (8) | ref|XP_006358946.1| | 6e-61 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 777 | 002528 (8) | ref|XP_004251889.1| | 3e-04 | PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum] |
| JMFF004F20 | Sequence | 582 | 001561 (8) | ref|XP_006358946.1| | 5e-71 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 769 | 002528 (8) | ref|XP_004251889.1| | 1e-04 | PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum] |
| JMFF008L15 | Sequence | 612 | 001561 (8) | ref|XP_006358946.1| | 2e-74 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 723 | 002528 (8) | ref|XP_010277758.1| | 4e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF020B09 | Sequence | 594 | 001561 (8) | ref|XP_006358946.1| | 2e-73 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 771 | 002528 (8) | ref|XP_010277758.1| | 1e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF022K12 | Sequence | 459 | 001561 (8) | ref|XP_006358946.1| | 4e-43 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 724 | 002528 (8) | ref|XP_010277758.1| | 4e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFN042H15 | Sequence | 610 | 001561 (8) | ref|XP_006358946.1| | 1e-99 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | |||||
| JMSF047P14 | Sequence | 683 | 001561 (8) | ref|XP_006358946.1| | 4e-108 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 726 | 002528 (8) | ref|XP_010277758.1| | 4e-05 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
This contig is upended
. : . : . : . : . : . :
JMFN042H15+ CGAATAGA
JMSF047P14+ CGAATAGA
____________________________________________________________
consensus CGAATAGA
. : . : . : . : . : . :
JMFN042H15+ GCATACCCTTTAGACTANCCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
JMSF047P14+ GCATACCCTTTAGACTTACCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
____________________________________________________________
consensus GCATACCCTTTAGACTTACCGGTCACCTTATCAAATCCTAGTGGCCCTTCCTCTATCTCC
. : . : . : . : . : . :
JMFN042H15+ CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
JMFF001C06+ CCCC
JMSF047P14+ CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
____________________________________________________________
consensus CCATACATTGAGAACTGCTGCAACAATCTCTCCGTGGGCATATCATAAGGCACATTCCCC
. : . : . : . : . : . :
JMFN042H15+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMFF001C06+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMSF047P14+ ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
JMFF008L15+ CCCA
____________________________________________________________
consensus ACATATATCTTCCTCAATGATATATCCACAGGATTATTCGAGCTCCCACCTCCAGGCCCA
. : . : . : . : . : . :
JMFN042H15+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF001C06+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMSF047P14+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF008L15+ CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF020B09+ ATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
JMFF004F20+ GCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
____________________________________________________________
consensus CCCTGCATACCGGCAGCTGCCAGCTGTGTGACAGTCATTCGACCATCAATTTGCTTACTG
. : . : . : . : . : . :
JMFN042H15+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF001C06+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMSF047P14+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF008L15+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF020B09+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF004F20+ GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
JMFF004B02+ TAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
____________________________________________________________
consensus GGTTCCTTTAGAGCAAGCAGGGCTCCATCAATATGTTTAAAGGTGATAAAGCCGTAACCT
. : . : . : . : . : . :
JMFN042H15+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF001C06+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMSF047P14+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF008L15+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF020B09+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF004F20+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF022K12+ TCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
JMFF004B02+ TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
____________________________________________________________
consensus TTACTCTTTCCAGTAGCCTTATCGAGGATTACCACGGCCTCCTCAAGCTCGCCGTAGGTG
. : . : . : . : . : . :
JMFN042H15+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF001C06+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMSF047P14+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF008L15+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF020B09+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF004F20+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF022K12+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
JMFF004B02+ GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
____________________________________________________________
consensus GAGAAAAGGGAACGAAGCTTATCGGTGGTAGTTTCCCAACCGAGGCCGCGAATGAAAAGC
. : . : . : . : . : . :
JMFN042H15+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF001C06+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMSF047P14+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF008L15+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF020B09+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF004F20+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF022K12+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
JMFF004B02+ TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
____________________________________________________________
consensus TTCCGCTGCGTCGTGTCTTGGTCGGCAATTGAACGGACGGCGCCGAGGACGTCAGGGTGA
. : . : . : . : . : . :
JMFN042H15+ CGAACAACTGTGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF001C06+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMSF047P14+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF008L15+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF020B09+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF004F20+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF022K12+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
JMFF004B02+ CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
____________________________________________________________
consensus CGAACAACTGCGTTCTGGACGATCTCGAAGAGCTGGTCGCGCGTGAAGGATTCGAGGATT
. : . : . : . : . : . :
JMFN042H15+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF001C06+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMSF047P14+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF008L15+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF020B09+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF004F20+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF022K12+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
JMFF004B02+ TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
____________________________________________________________
consensus TTGCGCGCGTCTTCGAGCGACAGCCTGGGGAGAAAGGAGGGGTCAGAAACAACGCCGTTG
. : . : . : . : . : . :
JMFN042H15+ TC
JMFF001C06+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMSF047P14+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF008L15+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF020B09+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF004F20+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF022K12+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
JMFF004B02+ TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
____________________________________________________________
consensus TCTTCGAGCTTCCGTTTTTTCATGAAGTCCATTGCTGAGAATTGAGGAACGAGGATCTTC
. : . : . : . : . : . :
JMSF047P14+ AGAGAAGCTTAA
JMFF008L15+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF020B09+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF004F20+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF022K12+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
JMFF004B02+ AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
____________________________________________________________
consensus AGAGAAGCTTAATCAAGTAATATCCTTAAATAGCTTGAATTTAAAACCCTAACCCTAACA
. : . : . : . : . : . :
JMFF008L15+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF020B09+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF004F20+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF022K12+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
JMFF004B02+ AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT
____________________________________________________________
consensus AAGAAAGGGTTTGATACTTCGCAAAGGTGACGATTGGGGTTGGCGGATTGCCCAGAGACT