Contig 001552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002J07Sequence566001552 (3)ref|XP_009764826.1|2e-47PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris]715014800ref|XP_011074306.1|2e-95PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]
JMFS119F07Sequence642001552 (3)ref|XP_009764826.1|8e-64PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris]
JMFS155B12Sequence615001552 (3)ref|XP_009764826.1|1e-60PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS119F07+                 CATGCAGGTTGTTAAGATCAAAGATTTCAGCTTTTCAGCCCGGATATCGCCNCC
                      ____________________________________________________________
consensus                   CATGCAGGTTGTTAAGATCAAAGATTTCAGCTTTTCAGCCCGGATATCGCCNCC
 
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JMFS119F07+           GGGAGCTCCCATGGATTAAACCCNCCGTTCTCATTGAAAACCAGCACCTCCAGGTTGGTT
JMFS155B12+                 TCCCATGGATTAAACCCCCCGTTCTCATTGAAAACCAGCACCTCCAGGTTGGTT
                      ____________________________________________________________
consensus             GGGAGCTCCCATGGATTAAACCCCCCGTTCTCATTGAAAACCAGCACCTCCAGGTTGGTT
 
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JMFS119F07+           AAATTGGTAAAAGACATGGGGAATTCACCTGTGAAGAGATTATAGGAAAGATCAAGAGCC
JMFS155B12+           AAATTGGTAAAAGACATGGGGAATTCACCTGTGAAGAGATTATAGGAAAGATCAAGAGCC
JMFF002J07+                                             AGAGATTATAGGAAAGATCAAGAGCC
                      ____________________________________________________________
consensus             AAATTGGTAAAAGACATGGGGAATTCACCTGTGAAGAGATTATAGGAAAGATCAAGAGCC
 
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JMFS119F07+           CTCAAAGCTTGCAGAGGGGACAAATCTGGCAATGATCCTGTGAGATTTGTAGCAGTCATG
JMFS155B12+           CTCAAAGCTTGCAGAGGGGACAAATCTGGCAATGATCCTGTGAGATTTGTAGCAGTCATG
JMFF002J07+           CTCAAAGCTTGCAGAGGGGACAAATCTGGCAATGATCCTGTGAGATTTGTAGCAGTCATG
                      ____________________________________________________________
consensus             CTCAAAGCTTGCAGAGGGGACAAATCTGGCAATGATCCTGTGAGATTTGTAGCAGTCATG
 
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JMFS119F07+           TTAAGCTCTTCCAAGAAAGAGCAGCTGGTGAGGCTTCCAGGGAACCCGCCATGGAACTTA
JMFS155B12+           TTAAGCTCTTCCAAGAAAGAGCAGCTGGTGAGGCTTCCAGGGAACCCGCCATGGAACTTA
JMFF002J07+           TTAAGCTCTTCCAAGAAAGAGCAGCTGGTGAGGCTTCCAGGGAACCCGCCATGGAACTTA
                      ____________________________________________________________
consensus             TTAAGCTCTTCCAAGAAAGAGCAGCTGGTGAGGCTTCCAGGGAACCCGCCATGGAACTTA
 
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JMFS119F07+           TTGTGCCCGACTCGAAGAACTCTCAGTTTCGGGAGATAAGAACACACATCTCCAGGAAAT
JMFS155B12+           TTGTGCCCGACTCGAAGAACTCTCAGTTTCGGGAGATAAGAACACACATCTCCAGGAAAT
JMFF002J07+           TTGTGCCCGACTCGAAGAACTCTCAGTTTCGGGAGATAAGAACACACATCTCCAGGAAAT
                      ____________________________________________________________
consensus             TTGTGCCCGACTCGAAGAACTCTCAGTTTCGGGAGATAAGAACACACATCTCCAGGAAAT
 
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JMFS119F07+           TCCCCTGAAATCGACCACCCCGACACATCAATCTTGACAACATAGTCTTTATCGTCACAA
JMFS155B12+           TCCCCTGAAATCGACCACCCCGACACATCAATCTTGACAACATAGTCTTTATCGTCACAA
JMFF002J07+           TCCCCTGAAATCGACCACCCCGACACATCAATCTTGACAACATAGTCTTTATCGTCACAA
                      ____________________________________________________________
consensus             TCCCCTGAAATCGACCACCCCGACACATCAATCTTGACAACATAGTCTTTATCGTCACAA
 
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JMFS119F07+           ACAACCCCTCTGTACTCACACACAGCCTCTCCATCCCATCTCCCCATCAAGCTCCCAGTG
JMFS155B12+           ACAACCCCTCTGTACTCACACACAGCCTCTCCATCCCATCTCCCCATCAAGCTCCCAGTG
JMFF002J07+           ACAACCCCTCTGTACTCACACACAGCCTCTCCATCCCATCTCCCCATCAAGCTCCCAGTG
                      ____________________________________________________________
consensus             ACAACCCCTCTGTACTCACACACAGCCTCTCCATCCCATCTCCCCATCAAGCTCCCAGTG
 
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JMFS119F07+           AAAGACTTCTTCATGGCAGTGAAAAACTCAGACTGGTCATCCAATCTTGCCTGATAAGAC
JMFS155B12+           AAAGACTTCTTCATGGCAGTGAAAAACTCAGACTGGTCATCCAATCTTGCCTGATAAGAC
JMFF002J07+           AAAGACTTCTTCATGGCAGTGAAAAACTCAGACTGGTCATCCAATCTTGCCTGATAAGAC
                      ____________________________________________________________
consensus             AAAGACTTCTTCATGGCAGTGAAAAACTCAGACTGGTCATCCAATCTTGCCTGATAAGAC
 
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JMFS119F07+           CCGGATACCGAGTACAATAGCAGTAACAGGAGGATAGCAATTCTGTGAAGAGCCATTTTT
JMFS155B12+           CCGGATACCGAGTACAATAGCAGTAACAGGAGGATAGCAATTCTGTGAAGAGCCATTTTT
JMFF002J07+           CCGGATACCGAGTACAATAGCAGTAACAGGAGGATAGCAATTCTGTGAAGAGCCATTTTT
                      ____________________________________________________________
consensus             CCGGATACCGAGTACAATAGCAGTAACAGGAGGATAGCAATTCTGTGAAGAGCCATTTTT
 
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JMFS119F07+           TTGTTTGTCTTTTTTTGGTCTCTGGATGATGAAAATGGAGGAAAGAAG            
JMFS155B12+           TTGTTTGTCTTTTTTTGGTCTCTGGATGATGAAAATGGAGGAAAGAAGTTATGGTGGTTA
JMFF002J07+           TTGTTTGTCTTTTTTTGGTCTCTGGATGATGAAAATGGAGGAAAGAAGTTATGGTGGTTA
                      ____________________________________________________________
consensus             TTGTTTGTCTTTTTTTGGTCTCTGGATGATGAAAATGGAGGAAAGAAGTTATGGTGGTTA
 
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JMFS155B12+           AGTTGTTG                                                    
JMFF002J07+           AGTTGTTGGAGAGAAAGGAAGAGAAGAAATATATAAATGGGAAAGAGTGATGGCATTATT
                      ____________________________________________________________
consensus             AGTTGTTGGAGAGAAAGGAAGAGAAGAAATATATAAATGGGAAAGAGTGATGGCATTATT