Contig 001547:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L22Sequence561001547 (14)ref|XP_009787811.1|9e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana530001547 (14)ref|XP_009787811.1|6e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN003M13Sequence606001547 (14)ref|XP_009787811.1|1e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN016I11Sequence523001547 (14)gb|EYU19142.1|5e-60hypothetical protein MIMGU_mgv1a016210mg [Erythranthe guttata]
JMFN018O07Sequence544001547 (14)ref|XP_009787811.1|8e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN028J16Sequence614001547 (14)ref|XP_009787811.1|2e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN032P20Sequence518001547 (14)ref|XP_011096659.1|1e-43PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Sesamum i
JMFN036P22Sequence484001547 (14)gb|EYU19142.1|5e-54hypothetical protein MIMGU_mgv1a016210mg [Erythranthe guttata]
JMFN038G10Sequence341001547 (14)pdb|3LW5|K6e-34Chain K, Improved Model Of Plant Photosystem I
JMFN038I14Sequence493001547 (14)ref|XP_009787811.1|2e-58PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMSF008I15Sequence329001547 (14)ref|XP_009622475.1|4e-32PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana566001547 (14)ref|XP_009787811.1|1e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMSF053K21Sequence551001547 (14)ref|XP_009787811.1|6e-47PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana516001547 (14)ref|XP_009787811.1|4e-47PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN028J16+ GTCAAACTTGTAATATTGTGATTATCAAATTAACAGCCCGACCAACTTGACA
JMFN003M13+ GATTATCAAATTAACAGCCCGACCAACTTGACA
                      ____________________________________________________________
consensus GTCAAACTTGTAATATTGTGATTATCAAATTAACAGCCCGACCAACTTGACA
 
. : . : . : . : . : . :
JMFN028J16+ AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
JMFN036P22+ CATAGGAAATTAAATA
JMFN038G10+ AGGAAATTAAATA
JMFN003M13+ AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
JMSF053K21+ TAGGAAATTAAATA
JMFN018O07+ CATAGGAAATTAAATA
JMFN016I11- A
JMFN038I14+ GAAATTAAATA
JMFN032P20+ AAATA
JMFF001L22+ GGAAATTAAATA
                      ____________________________________________________________
consensus AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
 
. : . : . : . : . : . :
JMFN028J16+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN036P22+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN038G10+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN003M13+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
rJMSF053K21- ACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMSF053K21+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN018O07+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
rJMFF001L22- GTTAAAGGGAACATTATACTCCTTAATTC-CAAATTAATATAGGCATAACC
rJMSF008I15- ACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN016I11- ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN038I14+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN032P20+ GCATATATAGTTAAAGGGATCATTATACTCCTTAATTCACAAATTAATATAGGCATACCC
JMFF001L22+ ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
                      ____________________________________________________________
consensus ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
 
. : . : . : . : . : . :
JMFN028J16+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN036P22+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN038G10+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN003M13+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMSF053K21- ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMSF053K21+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN018O07+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMFF001L22- ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMSF008I15- ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN016I11- ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN038I14+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN032P20+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACATCTCCA
JMFF001L22+ ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
                      ____________________________________________________________
consensus ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
 
. : . : . : . : . : . :
JMFN028J16+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN036P22+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN038G10+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN003M13+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMSF053K21- ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMSF053K21+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN018O07+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMFF001L22- ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMSF008I15- ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN016I11- ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN038I14+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN032P20+ CCACCAATGATGTGCCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGATCCCGTCC
JMFF001L22+ ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
                      ____________________________________________________________
consensus ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
 
. : . : . : . : . : . :
JMFN028J16+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN036P22+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTACAGCTTCAGACCGGCGGTCGCCTTC
JMFN038G10+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN003M13+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMSF053K21- GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMSF053K21+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN018O07+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMFF001L22- GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMSF008I15- GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN016I11- GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN038I14+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN032P20+ GGGTCATCCGATTGTAGACCGGAGTCTCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFF001L22+ GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
                      ____________________________________________________________
consensus GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
 
. : . : . : . : . : . :
JMFN028J16+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN036P22+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN038G10+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN003M13+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMSF053K21- CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMSF053K21+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN018O07+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMFF001L22- CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMSF008I15- CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMSF008I15+ TGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN016I11- CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN038I14+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGTTTGTTGCTGTC
JMFN032P20+ CGGTTTGCTGATGGCTCCAGCCCGAACCTCCCAGCAAATAGCATTAGCCTTGTTGCTGTC
JMFF001L22+ CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
                      ____________________________________________________________
consensus CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
 
. : . : . : . : . : . :
JMFN028J16+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN036P22+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAAGGAGCTCCCAAAGCACCTCCT
JMFN038G10+ ACCATTATCAAATTTGTGGGTGAGCCAA
JMFN003M13+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMSF053K21- ACCATTATCAAATTTGTGGGTGAGCCAATGAAACCACAACGAGCTCCCAAAGCACCTCCT
JMSF053K21+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAACCACAACGAGCTCCCAAAGCACCTCCT
JMFN018O07+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMFF001L22- ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMSF008I15- ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMSF008I15+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN016I11- ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN038I14+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATAACAACGAGCTCCCAAAGCACCTCCT
JMFN032P20+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCTCCTCCT
JMFF001L22+ ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
                      ____________________________________________________________
consensus ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
 
. : . : . : . : . : . :
JMFN028J16+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN036P22+ -CACCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN003M13+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMSF053K21- -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMSF053K21+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN018O07+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMFF001L22- -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMSF008I15- -CCCCTGCGCTTCATTGGTTGTAGGGCAACC
JMSF008I15+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACC
JMFN016I11- -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN038I14+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN032P20+ CCCCCTGCGCTTCATTGGTTGTAGGGCAACCAACCTCCTCGAGGGAGAAGTTGATGGGGC
JMFF001L22+ -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
                      ____________________________________________________________
consensus -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
 
. : . : . : . : . : . :
JMFN028J16+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN036P22+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTG
JMFN003M13+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
rJMSF053K21- TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMSF053K21+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN018O07+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
rJMFF001L22- TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN016I11- TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN038I14+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN032P20+ TGTGATGGCTTTAAGCCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFF001L22+ TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
                      ____________________________________________________________
consensus TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
 
. : . : . : . : . : . :
JMFN028J16+ CC-TAATTTCAAACAAAAAACCTG
JMFN003M13+ CCTTAATTTCAAACAAAAAACCTGTGAGATCTTC
rJMSF053K21- CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCT
JMSF053K21+ CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCT
JMFN018O07+ CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTG
rJMFF001L22- CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAA
JMFN016I11- CCTTAATTT
JMFN038I14+ CCT
JMFN032P20+ CCTTAATTTCAAACAAAAAACCTGTGAGATCTT
JMFF001L22+ CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTT
                      ____________________________________________________________
consensus CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTT