Contig 001547:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L22Sequence561001547 (14)ref|XP_009787811.1|9e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana530001547 (14)ref|XP_009787811.1|6e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN003M13Sequence606001547 (14)ref|XP_009787811.1|1e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN016I11Sequence523001547 (14)gb|EYU19142.1|5e-60hypothetical protein MIMGU_mgv1a016210mg [Erythranthe guttata]
JMFN018O07Sequence544001547 (14)ref|XP_009787811.1|8e-60PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN028J16Sequence614001547 (14)ref|XP_009787811.1|2e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMFN032P20Sequence518001547 (14)ref|XP_011096659.1|1e-43PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Sesamum i
JMFN036P22Sequence484001547 (14)gb|EYU19142.1|5e-54hypothetical protein MIMGU_mgv1a016210mg [Erythranthe guttata]
JMFN038G10Sequence341001547 (14)pdb|3LW5|K6e-34Chain K, Improved Model Of Plant Photosystem I
JMFN038I14Sequence493001547 (14)ref|XP_009787811.1|2e-58PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMSF008I15Sequence329001547 (14)ref|XP_009622475.1|4e-32PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana566001547 (14)ref|XP_009787811.1|1e-59PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana
JMSF053K21Sequence551001547 (14)ref|XP_009787811.1|6e-47PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana516001547 (14)ref|XP_009787811.1|4e-47PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana

Alignment

This contig is upended


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JMFN028J16+                   GTCAAACTTGTAATATTGTGATTATCAAATTAACAGCCCGACCAACTTGACA
JMFN003M13+                                      GATTATCAAATTAACAGCCCGACCAACTTGACA
                      ____________________________________________________________
consensus                     GTCAAACTTGTAATATTGTGATTATCAAATTAACAGCCCGACCAACTTGACA
 
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JMFN028J16+           AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
JMFN036P22+                                                       CATAGGAAATTAAATA
JMFN038G10+                                                          AGGAAATTAAATA
JMFN003M13+           AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
JMSF053K21+                                                         TAGGAAATTAAATA
JMFN018O07+                                                       CATAGGAAATTAAATA
JMFN016I11-                                                                      A
JMFN038I14+                                                            GAAATTAAATA
JMFN032P20+                                                                  AAATA
JMFF001L22+                                                           GGAAATTAAATA
                      ____________________________________________________________
consensus             AGCATTATTTTGATAATGCGATATATGATTCACGAGAACTTAAACATAGGAAATTAAATA
 
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JMFN028J16+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN036P22+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN038G10+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN003M13+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
rJMSF053K21-                             ACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMSF053K21+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN018O07+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
rJMFF001L22-                   GTTAAAGGGAACATTATACTCCTTAATTC-CAAATTAATATAGGCATAACC
rJMSF008I15-                             ACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN016I11-           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN038I14+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
JMFN032P20+           GCATATATAGTTAAAGGGATCATTATACTCCTTAATTCACAAATTAATATAGGCATACCC
JMFF001L22+           ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
                      ____________________________________________________________
consensus             ACATATATAGTTAAAGGGAACATTATACTCCTTAATTCACAAATTAATATAGGCATAACC
 
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JMFN028J16+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN036P22+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN038G10+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN003M13+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMSF053K21-          ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMSF053K21+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN018O07+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMFF001L22-          ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
rJMSF008I15-          ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN016I11-           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN038I14+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
JMFN032P20+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACATCTCCA
JMFF001L22+           ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
                      ____________________________________________________________
consensus             ATAGCAAAAGACAGAGAAATTTAGAGAGCACCAATGTTCTTGAGGCCAAGAACAACTCCA
 
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JMFN028J16+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN036P22+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN038G10+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN003M13+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMSF053K21-          ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMSF053K21+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN018O07+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMFF001L22-          ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
rJMSF008I15-          ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN016I11-           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN038I14+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
JMFN032P20+           CCACCAATGATGTGCCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGATCCCGTCC
JMFF001L22+           ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
                      ____________________________________________________________
consensus             ACACCAATGATGTGGCCAACAGTGCCACAAGCCAAGGTATCAGCAAGAGTGAACCCGGCC
 
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JMFN028J16+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN036P22+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTACAGCTTCAGACCGGCGGTCGCCTTC
JMFN038G10+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN003M13+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMSF053K21-          GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMSF053K21+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN018O07+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMFF001L22-          GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
rJMSF008I15-          GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN016I11-           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN038I14+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFN032P20+           GGGTCATCCGATTGTAGACCGGAGTCTCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
JMFF001L22+           GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
                      ____________________________________________________________
consensus             GGGTCACCCGATTGTAGACCGGAGTCCCGGCTCTCCAGCTTCAGACCGGCGGTCGCCTTC
 
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JMFN028J16+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN036P22+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN038G10+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN003M13+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMSF053K21-          CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMSF053K21+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN018O07+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMFF001L22-          CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
rJMSF008I15-          CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMSF008I15+                      TGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN016I11-           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
JMFN038I14+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGTTTGTTGCTGTC
JMFN032P20+           CGGTTTGCTGATGGCTCCAGCCCGAACCTCCCAGCAAATAGCATTAGCCTTGTTGCTGTC
JMFF001L22+           CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
                      ____________________________________________________________
consensus             CGGTTTGCTGATGGCGCCAGCCCGAACCTCCCAGCAAATAGCATTAGGCTTGTTGCTGTC
 
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JMFN028J16+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN036P22+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAAGGAGCTCCCAAAGCACCTCCT
JMFN038G10+           ACCATTATCAAATTTGTGGGTGAGCCAA                                
JMFN003M13+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMSF053K21-          ACCATTATCAAATTTGTGGGTGAGCCAATGAAACCACAACGAGCTCCCAAAGCACCTCCT
JMSF053K21+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAACCACAACGAGCTCCCAAAGCACCTCCT
JMFN018O07+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMFF001L22-          ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
rJMSF008I15-          ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMSF008I15+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN016I11-           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
JMFN038I14+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATAACAACGAGCTCCCAAAGCACCTCCT
JMFN032P20+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCTCCTCCT
JMFF001L22+           ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
                      ____________________________________________________________
consensus             ACCATTATCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCT
 
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JMFN028J16+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN036P22+           -CACCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN003M13+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMSF053K21-          -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMSF053K21+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN018O07+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMFF001L22-          -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
rJMSF008I15-          -CCCCTGCGCTTCATTGGTTGTAGGGCAACC                             
JMSF008I15+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACC                             
JMFN016I11-           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN038I14+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
JMFN032P20+           CCCCCTGCGCTTCATTGGTTGTAGGGCAACCAACCTCCTCGAGGGAGAAGTTGATGGGGC
JMFF001L22+           -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
                      ____________________________________________________________
consensus             -CCCCTGCGCTTCATTGGTTGTAGGGCAACCAAACTCCTCGAGGGAGAAGTTGATGGGGC
 
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JMFN028J16+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN036P22+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTG           
JMFN003M13+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
rJMSF053K21-          TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMSF053K21+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN018O07+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
rJMFF001L22-          TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN016I11-           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN038I14+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFN032P20+           TGTGATGGCTTTAAGCCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
JMFF001L22+           TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
                      ____________________________________________________________
consensus             TGTGATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTT
 
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JMFN028J16+           CC-TAATTTCAAACAAAAAACCTG                                    
JMFN003M13+           CCTTAATTTCAAACAAAAAACCTGTGAGATCTTC                          
rJMSF053K21-          CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCT             
JMSF053K21+           CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCT             
JMFN018O07+           CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTG            
rJMFF001L22-          CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAA      
JMFN016I11-           CCTTAATTT                                                   
JMFN038I14+           CCT                                                         
JMFN032P20+           CCTTAATTTCAAACAAAAAACCTGTGAGATCTT                           
JMFF001L22+           CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTT
                      ____________________________________________________________
consensus             CCTTAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTT