Contig 001543:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006G03Sequence195001543 (3)gb|KGN53990.1|3e-04hypothetical protein Csa_4G243140 [Cucumis sativus]
JMCP010E03Sequence166001543 (3)
JMCP019D03Sequence198001543 (3)gb|KGN53990.1|6e-04hypothetical protein Csa_4G243140 [Cucumis sativus]

Alignment

This contig is upended


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rJMCP010E03+                                                                AAAAAA
rJMCP006G03+                                                       GCACTCTTGAAAAAA
rJMCP019D03+                                                                AAAAAA
                      ____________________________________________________________
consensus                                                          GCACTCTTGAAAAAA
 
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rJMCP010E03+          AATTTTAAAGCAATAAATTTGcgaTCATTATCAcaaaGTGCTGCGGATGAAATTTGCCAA
rJMCP006G03+          AATTTTAAAGCAATAAATTTGGCTTCATTATCAGTTTGTGCTGCGGATGAAATTTGCCAA
rJMCP019D03+          AATTTTAAAGCAATAAATTTGGCTTCATTATCAGTTTGTGCTGCGGATGAAATTTGCCAA
                      ____________________________________________________________
consensus             AATTTTAAAGCAATAAATTTGGCTTCATTATCAGTTTGTGCTGCGGATGAAATTTGCCAA
 
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rJMCP010E03+          ACCATGAAAACTATAAAagaAAATggaATAGCACATGACAAATTagatcAGAagaCCttg
rJMCP006G03+          ACCATGAAAACTATAAATCTAAATCCTATAGCACATGACAAATTTCTAGAGATCTCCAAC
rJMCP019D03+          ACCATGAAAACTATAAATCTAAATCCTATAGCACATGACAAATTTCTAGAGATCTCCATC
                      ____________________________________________________________
consensus             ACCATGAAAACTATAAATCTAAATCCTATAGCACATGACAAATTTCTAGAGATCTCCAAC
 
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rJMCP010E03+          AACTgt                                                      
rJMCP006G03+          AACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATA
rJMCP019D03+          AACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATA
                      ____________________________________________________________
consensus             AACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATA