Contig 001541:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006B01Sequence343001541 (4)
JMCP007F08Sequence343001541 (4)
JMCP012H04Sequence321001541 (4)
JMCP017H12Sequence342001541 (4)

Alignment

This contig is upended


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rJMCP006B01+                            GTATAAATATCTTATTGTGCTAATGACCTTATGGCCTAGTAG
JMCP012H04+                             GTATAAATATCTTATTGTGCTAATGACCTTATGGCCTAGTAG
JMCP007F08+                            CGTATAAATATCTTATTGTGCTAATGACCTTATGGCCTAGTAG
rJMCP017H12+                            GTATAAATATCTTATTGTGCTAATGACCTTATGGCCTAGTAG
                      ____________________________________________________________
consensus                              CGTATAAATATCTTATTGTGCTAATGACCTTATGGCCTAGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006B01+          CACGGAATGGCTCTCCCAATACGAAAATTTTACGTTTGTTCCTCAAACCTAAAACATATG
JMCP012H04+           CACGGAATGGCTCTCCCAATACGAAAATTTTACGTTTGTTCCTCAAACCTAAAACATATG
JMCP007F08+           CACGGAATGGCTCTCCCAATACGAAAATTTTACGTTTGTTCCTCAAACCTAAAACATATG
rJMCP017H12+          CACGGAATGGCTCTCCCAATACGAAAATTTTACGTTTGTTCCTCAAACCTAAAACATATG
                      ____________________________________________________________
consensus             CACGGAATGGCTCTCCCAATACGAAAATTTTACGTTTGTTCCTCAAACCTAAAACATATG
 
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rJMCP006B01+          ACTGAAACCATAATCATGGTGATCACTCAACGTAACACCCACACTTGCCGATCTATTCGA
JMCP012H04+           ACTGAAACCATAATCATGGTGATCACTCAACGTAACACCCACACTacCCGAagTATTCGA
JMCP007F08+           ACTGAAACCATAATCATGGTGATCACTCAACGTAACACCCACACTTGCCGATCTATTCGA
rJMCP017H12+          ACTGAAACCATAATCATGGTGATCACTCAACGTAACACCCACACTTGCCGATCTATTCGA
                      ____________________________________________________________
consensus             ACTGAAACCATAATCATGGTGATCACTCAACGTAACACCCACACTTGCCGATCTATTCGA
 
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rJMCP006B01+          AATTTGCGAAAGAACCCTCAATTGGCCAACCTCTCACGTCCTACCTGACCGGACAGTGCT
JMCP012H04+           AATTTGCGAAAGAACCCTCAATaccgCAACCTCTCACGTCCTACCTGACCGGACAGTGCT
JMCP007F08+           AATTTGCGAAAGAACCCTCAATTGGCCAACCTCTCACGTCCTACCTGACCGGACAGTGCT
rJMCP017H12+          AATTTGCGAAAGAACCCTCAATTGGCCAACCTCTCACGTCCTACCTGACCGGACAGTGCT
                      ____________________________________________________________
consensus             AATTTGCGAAAGAACCCTCAATTGGCCAACCTCTCACGTCCTACCTGACCGGACAGTGCT
 
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rJMCP006B01+          CCTAAGGAAAGATGACGACAATGTGGAAAATCCTCGAGAAGAGAGGGAGATTCATCCGAG
JMCP012H04+           CCTAAGGAAAGATGACGACAATGTGGAAAATCCTCGAGAAGAGAGGGAGATTCATCCGAG
JMCP007F08+           CCTAAGGAAAGATGACGACAATGTGGAAAATCCTCGAGAAGAGAGGGAGATTCATCCGAG
rJMCP017H12+          CCTAAGGAAAGATGACGACAATGTGGAAAATCCTCGAGAAGAGAGGGAGATTCATCCGAG
                      ____________________________________________________________
consensus             CCTAAGGAAAGATGACGACAATGTGGAAAATCCTCGAGAAGAGAGGGAGATTCATCCGAG
 
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rJMCP006B01+          CACACGCTCATCGGTCACTAGAGTCTCATAGACTTGGCCGGTCGAACTTgAATTCCTCCC
JMCP012H04+           CACACGCTCATCGGTCtCTAGAGTCaCATAGACTTGGC                      
JMCP007F08+           CACACGCTCATCGGTCACTAGAGTCTCATAGACTTGGCCGGTCGAACTTCAATTCCTCCC
rJMCP017H12+          CACACGCTCATCGGTCACTGGAGTCTCATAGACTTGGCCGGTCGAACTTCAATTCCTCCC
                      ____________________________________________________________
consensus             CACACGCTCATCGGTCACTAGAGTCTCATAGACTTGGCCGGTCGAACTTCAATTCCTCCC