Contig 001539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002C08Sequence439001539 (17)
JMCP004D02Sequence438001539 (17)
JMCP004E08Sequence411001539 (17)
JMCP004H11Sequence438001539 (17)
JMCP005D06Sequence439001539 (17)
JMCP006G06Sequence439001539 (17)
JMCP007E09Sequence439001539 (17)
JMCP010B10Sequence288001539 (17)
JMCP010B11Sequence114001539 (17)
JMCP010E02Sequence378001539 (17)
JMCP011E04Sequence446001539 (17)
JMCP017C06Sequence438001539 (17)
JMCP018B03Sequence431001539 (17)
JMCP019E01Sequence438001539 (17)
JMCP019E02Sequence438001539 (17)
JMCP019E04Sequence439001539 (17)
JMCP019G04Sequence381001539 (17)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP018B03+ CCTGTTCTTGGGTTTTTTG
rJMCP006G06+ CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP002C08+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E04+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP017C06+ CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E02+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E01+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP004H11+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP007E09+ CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP005D06+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP004D02+ CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP011E04+ CCAGATTTCCTGTTCTTGGGTTTTTTG
                      ____________________________________________________________
consensus CCAGATTTCCTGTTCTTGGGTTTTTTG
 
. : . : . : . : . : . :
rJMCP018B03+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019G04+ ACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP010E02+ TAGAGAAGTaCATaaCaTCCTTTGCT
rJMCP006G06+ AGtttTTCAACGAagTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP002C08+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E04+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP017C06+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E02+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E01+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP004H11+ AGAAATACAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP007E09+ AGAAATTCAACGAagaTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP005D06+ GGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGGGAAGTTCATTTCTTCCTTTGCT
rJMCP004D02+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP004E08+ GAAATTCAACGAagaTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP011E04+ AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
                      ____________________________________________________________
consensus AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
 
. : . : . : . : . : . :
rJMCP018B03+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019G04+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP010E02+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP006G06+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP002C08+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E04+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP017C06+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E02+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E01+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004H11+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAACGGCCAAATGGGTTTCTTGCC
rJMCP007E09+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTagaTGCC
rJMCP005D06+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004D02+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004E08+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAGTGGGTTTCTTGCC
rJMCP010B10+ AATGGGTTTCTTGCC
rJMCP011E04+ TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
                      ____________________________________________________________
consensus TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
 
. : . : . : . : . : . :
rJMCP018B03+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019G04+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP010E02+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP006G06+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCaAGTGTATGGGTtttTTACATT
rJMCP002C08+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E04+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCCCAGGCTAGTGTATGGGTAAATTACATT
rJMCP017C06+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E02+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E01+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP004H11+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTtttTTACATT
rJMCP007E09+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP005D06+ CACAAAAGGCCAAATTCCCTAGTCATGTCCagaCAGGCaAGTGTATGGGTAAATTACATa
rJMCP004D02+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP004E08+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTGTGGGTAAATTACATT
rJMCP010B10+ CACAAAAGGCCAAATTCCCTAGTCATGTggaCTCAGGgTAGTGTATGGGTAAATTACATT
rJMCP011E04+ CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
                      ____________________________________________________________
consensus CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
 
. : . : . : . : . : . :
rJMCP018B03+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019G04+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP010E02+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP006G06+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP002C08+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E04+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP017C06+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E02+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E01+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP004H11+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP007E09+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP005D06+ ATTAGATGAAAGGGCCtaaGCtaccgcCCCACttcAtcCggtgataTGGcacattgaagg
rJMCP004D02+ ATTAGATGAAAGGACCATTGCATGGCG-CCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP004E08+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP010B10+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP011E04+ ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
                      ____________________________________________________________
consensus ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
 
. : . : . : . : . : . :
rJMCP018B03+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019G04+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP010E02+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP006G06+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAAagTACCGCCTAGGAATCAtTTGA
rJMCP002C08+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E04+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP017C06+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E02+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E01+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP004H11+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAtTTGA
rJMCP007E09+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP005D06+ tgtcgacagtcccgaactaaaacacaaaacCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP004D02+ ACTGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAtTTGA
rJMCP010B11+ GA
rJMCP004E08+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP010B10+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCCAGGAATCAATTGA
rJMCP011E04+ ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
                      ____________________________________________________________
consensus ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
 
. : . : . : . : . : . :
rJMCP018B03+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019G04+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010E02+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP006G06+ GCTGCTTGGGTGGgtcTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP002C08+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E04+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP017C06+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E02+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E01+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004H11+ GCTGCTTGGGTGGgtcTTCAAATAGGTTACTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP007E09+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP005D06+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004D02+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010B11+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004E08+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010B10+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTcgaATTGGGTGC
rJMCP011E04+ GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
                      ____________________________________________________________
consensus GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
 
. : . : . : . : . : . :
rJMCP018B03+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP019G04+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP010E02+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTA
rJMCP006G06+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGgtaATACTTTGTTCTATTATC
rJMCP002C08+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP019E04+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP017C06+ ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP019E02+ ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP019E01+ ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP004H11+ ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP007E09+ ACACTTTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP005D06+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP004D02+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP010B11+ ACAC-TTTTTTTTTCCCCCTTCTAGGAGGAGGCATATACTTTGTTCTATTATC
rJMCP004E08+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC
rJMCP010B10+ ACAC-TTTTTTTTTCCCCCTTCTAGGAGGAGGCA
rJMCP011E04+ ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATtataaaaGTagTATTATCTGCCCGG
                      ____________________________________________________________
consensus ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATCTGCCCGG