Contig 001539:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP018B03+                                                   CCTGTTCTTGGGTTTTTTG
rJMCP006G06+                                            CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP002C08+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E04+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP017C06+                                            CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E02+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP019E01+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP004H11+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP007E09+                                            CAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP005D06+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP004D02+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
rJMCP011E04+                                           CCAGATTTCCTGTTCTTGGGTTTTTTG
                      ____________________________________________________________
consensus                                              CCAGATTTCCTGTTCTTGGGTTTTTTG
 
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rJMCP018B03+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019G04+                                         ACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP010E02+                                            TAGAGAAGTaCATaaCaTCCTTTGCT
rJMCP006G06+          AGtttTTCAACGAagTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP002C08+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E04+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP017C06+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E02+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP019E01+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP004H11+          AGAAATACAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP007E09+          AGAAATTCAACGAagaTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP005D06+          GGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGGGAAGTTCATTTCTTCCTTTGCT
rJMCP004D02+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP004E08+           GAAATTCAACGAagaTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
rJMCP011E04+          AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
                      ____________________________________________________________
consensus             AGAAATTCAACGATCTTATGGAAATGTTAAAACCTAGAGAAGTTCATTTCTTCCTTTGCT
 
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rJMCP018B03+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019G04+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP010E02+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP006G06+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP002C08+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E04+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP017C06+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E02+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP019E01+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004H11+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAACGGCCAAATGGGTTTCTTGCC
rJMCP007E09+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTagaTGCC
rJMCP005D06+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004D02+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
rJMCP004E08+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAGTGGGTTTCTTGCC
rJMCP010B10+                                                       AATGGGTTTCTTGCC
rJMCP011E04+          TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
                      ____________________________________________________________
consensus             TCTATGTGTTGGTTTCTTTGAAATCATAAATTGTTCAAAAGGCCAAATGGGTTTCTTGCC
 
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rJMCP018B03+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019G04+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP010E02+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP006G06+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCaAGTGTATGGGTtttTTACATT
rJMCP002C08+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E04+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCCCAGGCTAGTGTATGGGTAAATTACATT
rJMCP017C06+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E02+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP019E01+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP004H11+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTtttTTACATT
rJMCP007E09+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP005D06+          CACAAAAGGCCAAATTCCCTAGTCATGTCCagaCAGGCaAGTGTATGGGTAAATTACATa
rJMCP004D02+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
rJMCP004E08+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTGTGGGTAAATTACATT
rJMCP010B10+          CACAAAAGGCCAAATTCCCTAGTCATGTggaCTCAGGgTAGTGTATGGGTAAATTACATT
rJMCP011E04+          CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
                      ____________________________________________________________
consensus             CACAAAAGGCCAAATTCCCTAGTCATGTCCTCTCAGGCTAGTGTATGGGTAAATTACATT
 
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rJMCP018B03+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019G04+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP010E02+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP006G06+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP002C08+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E04+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP017C06+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E02+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP019E01+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP004H11+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP007E09+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP005D06+          ATTAGATGAAAGGGCCtaaGCtaccgcCCCACttcAtcCggtgataTGGcacattgaagg
rJMCP004D02+          ATTAGATGAAAGGACCATTGCATGGCG-CCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP004E08+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP010B10+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
rJMCP011E04+          ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
                      ____________________________________________________________
consensus             ATTAGATGAAAGGACCATTGCATGGCGCCCACAAGAAGCCCACTATTGGGTGTAACTCCC
 
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rJMCP018B03+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019G04+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP010E02+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP006G06+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAAagTACCGCCTAGGAATCAtTTGA
rJMCP002C08+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E04+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP017C06+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E02+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP019E01+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP004H11+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAtTTGA
rJMCP007E09+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP005D06+          tgtcgacagtcccgaactaaaacacaaaacCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP004D02+          ACTGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAtTTGA
rJMCP010B11+                                                                    GA
rJMCP004E08+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
rJMCP010B10+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCCAGGAATCAATTGA
rJMCP011E04+          ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
                      ____________________________________________________________
consensus             ACAGCTGTCAGGGCTTGATCTTGTGTCTTGCCCACAATCTACCGCCTAGGAATCAATTGA
 
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rJMCP018B03+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019G04+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010E02+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP006G06+          GCTGCTTGGGTGGgtcTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP002C08+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E04+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP017C06+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E02+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP019E01+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004H11+          GCTGCTTGGGTGGgtcTTCAAATAGGTTACTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP007E09+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP005D06+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004D02+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010B11+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP004E08+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
rJMCP010B10+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTcgaATTGGGTGC
rJMCP011E04+          GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
                      ____________________________________________________________
consensus             GCTGCTTGGGTGGCAGTTCAAATAGGTTTCTTGTTTGATGTAGAAGTTGCTATTGGGTGC
 
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rJMCP018B03+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP019G04+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP010E02+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTA         
rJMCP006G06+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGgtaATACTTTGTTCTATTATC       
rJMCP002C08+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP019E04+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP017C06+          ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP019E02+          ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP019E01+          ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP004H11+          ACAC--TTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP007E09+          ACACTTTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP005D06+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP004D02+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP010B11+          ACAC-TTTTTTTTTCCCCCTTCTAGGAGGAGGCATATACTTTGTTCTATTATC       
rJMCP004E08+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATC       
rJMCP010B10+          ACAC-TTTTTTTTTCCCCCTTCTAGGAGGAGGCA                          
rJMCP011E04+          ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATtataaaaGTagTATTATCTGCCCGG
                      ____________________________________________________________
consensus             ACAC-TTTTTTTTTCCCCCTTCTAGGAAGAGGCATATACTTTGTTCTATTATCTGCCCGG