Contig 001535:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP003A03Sequence253001535 (6)
JMCP004H09Sequence280001535 (6)
JMCP007D06Sequence284001535 (6)
JMCP016A06Sequence287001535 (6)
JMCP016B04Sequence273001535 (6)
JMCP018E06Sequence295001535 (6)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018E06+               CGAACAATAAAATCAAACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
rJMCP016A06+                              AACTTGTAATTTTGATCATGCGTTGGTACGGTGCtAtTTt
rJMCP007D06+                              AACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
JMCP016B04+                                      AATTTTGATCATGCGTTGGTACGGTGCAAATTA
JMCP003A03+                                                            GGTGCAAATTA
rJMCP004H09+                              AACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAtTTA
                      ____________________________________________________________
consensus                  CGAACAATAAAATCAAACTTGTAATTTTGATCATGCGTTGGTACGGTGCAAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018E06+          AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP016A06+          AtTTAAATAAACAtCGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP007D06+          AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
JMCP016B04+           AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
JMCP003A03+           AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
rJMCP004H09+          AATTAAATAAACAtCGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
                      ____________________________________________________________
consensus             AATTAAATAAACAACGTAAGTGATGCATGAATTAGATTACAGTAGTGGTGGGTGTAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018E06+          CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP016A06+          CCAGCgagTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP007D06+          CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
JMCP016B04+           CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
JMCP003A03+           CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
rJMCP004H09+          CCAGCgagTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
                      ____________________________________________________________
consensus             CCAGCCTCTGACGATGTACACATTACCCTGCACCAACAGATAACAGCCGTCGTGGCGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018E06+          GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
rJMCP016A06+          GTGCgttCTGCAAACGTTGCCGTTTTGagTGCtgTGCGTACCGTACGCGTTTTCGCgttA
rJMCP007D06+          GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
JMCP016B04+           GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
JMCP003A03+           GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
rJMCP004H09+          GTGCCAtCTGCAAACGTTGCCGTTTTGagTGCACTGCGTACCGTACGCGTTTTCGCCAAA
                      ____________________________________________________________
consensus             GTGCCAACTGCAAACGTTGCCGTTTTGTCTGCACTGCGTACCGTACGCGTTTTCGCCAAA
 
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rJMCP018E06+          CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
rJMCP016A06+          gtttaGGAAGAAGCgtaAATAcCTTAGATTGTCGGTTTGtGCCGTAgtcTCGGAGTCCGG
rJMCP007D06+          CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACGGTCGGAGTCCGG
JMCP016B04+           CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
JMCP003A03+           CAAGTGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG
rJMCP004H09+          gtttTGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTAgtcTCGGAGTCCGG
                      ____________________________________________________________
consensus             CAAATGGAAGAAGCCATAATAGCTTAGATTGTCGGTTTGAGCCGTACAGTCGGAGTCCGG