Contig 001533:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001H05Sequence371001533 (2)
JMCP003G03Sequence605015199ref|XP_004249238.1|3e-19PREDICTED: two-component response regulator ARR9 [Solanum lycopersicum]371001533 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP001H05+ CACTTTGCACA
rJMCP003G03+ GCACTTTGCACA
                      ____________________________________________________________
consensus GCACTTTGCACA
 
. : . : . : . : . : . :
rJMCP001H05+ GTGGGGCGTCAAGAAAGATATAAAACGCGATTTTCAACTCttggaggtggaagaggACTC
rJMCP003G03+ GTGGGGCGTCAAGAAAGATATAAAACGCGATTTTCAACTCAACCTCCACCTCCTCCACTC
                      ____________________________________________________________
consensus GTGGGGCGTCAAGAAAGATATAAAACGCGATTTTCAACTCAACCTCCACCTTCTCCACTC
 
. : . : . : . : . : . :
rJMCP001H05+ TCCTCCATCTCTCTCTGCTCTGCGAACCCGAAGATATCTCGCAGAGATTTTGTACGCAAA
rJMCP003G03+ TCCTCCATCTCTCTCTGCTCTGCGAACCCGAAGATATCTCGCAGAGATTTTGTACGCAAA
                      ____________________________________________________________
consensus TCCTCCATCTCTCTCTGCTCTGCGAACCCGAAGATATCTCGCAGAGATTTTGTACGCAAA
 
. : . : . : . : . : . :
rJMCP001H05+ AATACTCAGAGCTCCCTCTCACTATATCTAAAACCCTTGTGTTTTTACCGACCAATTTTC
rJMCP003G03+ AATACTCAGAGCTCCCTCTCACTATATCTAAAACCCTTGTGTTTTTACCGACCAATTTTC
                      ____________________________________________________________
consensus AATACTCAGAGCTCCCTCTCACTATATCTAAAACCCTTGTGTTTTTACCGACCAATTTTC
 
. : . : . : . : . : . :
rJMCP001H05+ ATTTTGAATTTTTTTCGTTCGGCTTTGCGCAAGTATTTCTTCCCCTTCCATCTCCATTCT
rJMCP003G03+ ATTTTGAATTTTTTTCGTTCGGTTTTGCGCAAGTATTTCTTCCCCTTCCATCTCCATTCT
                      ____________________________________________________________
consensus ATTTTGAATTTTTTTCGTTCGGTTTTGCGCAAGTATTTCTTCCCCTTCCATCTCCATTCT
 
. : . : . : . : . : . :
rJMCP001H05+ CACTTCGCTGGGAATTCCACTCAGGCAATTGAGCGGCGCCGaggaggaaggcggtGGTGC
rJMCP003G03+ CACTTCGCTGGGAATTCCACTCAGGCAATTGAGCGGCGCCGTCCTCC-TCCGCCAGGTGC
                      ____________________________________________________________
consensus CACTTCGCTGGGAATTCCACTCAGGCAATTGAGCGGCGCCGTCCTCCTTCCGCCAGGTGC
 
. : . : . : . : . : . :
rJMCP001H05+ AAATTTCACTTTCCAATTTTGGGAGCGCATGAAAAATGCGTTTTTGTGTGTTTGCGTTGC
rJMCP003G03+ AAATTTCACTTTCCAATTTTGGGAGCGCATGAAAAATGCGTTTTTGTGTGTTTGCGTTGC
                      ____________________________________________________________
consensus AAATTTCACTTTCCAATTTTGGGAGCGCATGAAAAATGCGTTTTTGTGTGTTTGCGTTGC