Contig 001530:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001D06Sequence566001530 (5)
JMCP001G11Sequence573001530 (5)
JMCP002D05Sequence463001530 (5)
JMCP003B07Sequence545001530 (5)
JMCP010A01Sequence140001530 (5)

Alignment

This contig is upended


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JMCP001D06+                                          CTTTTAAACATGTAATTTGTAATGAATTT
JMCP003B07+                                          CTTTTAAtgtacaAATaacTAATGAATTT
JMCP001G11+                                   TAGCATACTTTTAAACtaGTAATTTGTAATGAATTT
                      ____________________________________________________________
consensus                                     TAGCATACTTTTAAACATGTAATTTGTAATGAATTT
 
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JMCP001D06+           TGGGatTAAAAAATTtaAATAGGGTTTAGGcgaTAGAGTTTattGATGGATatgagataa
JMCP003B07+           TGGGTATAAAAAATataAATAGGGTTTAGGcgaatctGTaTattctaGGtaatgagataa
JMCP001G11+           TGGGataAAAAAATatattTAGGGTTTAGGcgaTtcAGTTTattGATGGATatgagataa
                      ____________________________________________________________
consensus             TGGGTATAAAAAATTATAATAGGGTTTAGGGCTTAGAGTTTTAAGATGGATTACTCTATT
 
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JMCP001D06+           gaccGTAAAAATTGTTGAATGTGtcgaAtActcGATaTagtcgcaccgaAGCActcACCT
JMCP003B07+           gaccGTAAAAATTGTTGAAacactcgattAGAcctTaTagtcgcaccgatcCAGAGAgga
JMCP001G11+           gaccGTAAAAATTGTTGAATGTGtcgaAtActcGAaaTagtcgcaccgaAGCActcACCT
rJMCP002D05+                         TGAAacactcgatttctcctaaTagtcgcaccgatcgtctctgCT
                      ____________________________________________________________
consensus             CTGGGTAAAAATTGTTGAATGTGAGCTAAAGAGGATTTTCAGCGTGGCTAGCAGAGACCT
 
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JMCP001D06+           AAAATGGGAagcAAAAGCCAGATAGAACtaGagaAGAAATGGGTTTTGAC-TTTGTTTAC
JMCP003B07+           AAAATGGGtagcttAAGCCAGATAGAAgtacagatcAAATGGGTaaactgaaaacaaatg
JMCP001G11+           AAAATGGGAagcAAAAGCCAGATAGAACtaGagaAGAAATGGGTTTTGAC-TTTGTTTAC
rJMCP002D05+          AAAATGGctagctAAAGCCAGATAGAtgtacagatcAAATGGGTTTTGAC-TTTGTTTAg
                      ____________________________________________________________
consensus             AAAATGGGATCGAAAAGCCAGATAGAACATGTCTAGAAATGGGTTTTGAC-TTTGTTTAC
 
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JMCP001D06+           ATCAATataaaaaggAAAAGtgaGAACCCCAACCCGAaggGACAAAGCAaTTctctcGta
JMCP003B07+           tagttTataagaaggttttctgacttgCggttgggctaggctgtttcgtaaactctccta
JMCP001G11+           AaCAATataaaaaggAAAAGtgaGAACCCCAACCCGAaggGACAAAGCATTTctctcGta
rJMCP002D05+          taCAATataaaaagCAAAAGtgaGAACCCCAACCCGAaggGACAAAGgtaTTctctcGta
                      ____________________________________________________________
consensus             ATCAATTATTTTTCCAAAAGACTGAACCCCAACCCGATCCGACAAAGCATTTGAGAGGAT
 
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JMCP001D06+           GTAAATgtTGGTAtCaCAACTGAAgtaGAACgtgAcAcGaTActagacaGgagtgTGCCg
JMCP003B07+           catttagtacGattgagttgacAAgtaGAtggtgtcAcGaatctagacacgagtgacggg
JMCP001G11+           GTAAAagtTGGTAtCaCAACTGAAgtaGAACgtgAcAcGaaActagacacCagtgTGCCg
rJMCP002D05+          GTAAATgtTGGTAACaCAtCTGAAgtaGAACgtgActcGaTAGAagaGTGgagtgTGggg
                      ____________________________________________________________
consensus             GTAAATCATGGTAACTCAACTGAACATGAACCACAGAGGTTAGATCTGTGCTCACTGCCC
 
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JMCP001D06+           tgttGGAAATGGGTTTTGACTTTGTTTACATCAATataataataataataatagcTTGTT
JMCP003B07+           tCAAGGAAtacccaaaactgaTacaTTACATCAtTataataataTAaatattagcaacTT
JMCP001G11+           tgttGGAAtacGGTTTTGACTTTGTTTACAaCAATataataataataataatagcTTcaa
rJMCP002D05+          tgttGGAAATGGGTTTTGACTTTGTTTAgtaCAATTATataTATataataatagcaacaa
                      ____________________________________________________________
consensus             ACAAGGAAATGGGTTTTGACTTTGTTTACATCAATTATTATTATTATTATTATCGTTGTT
 
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JMCP001D06+           GTTGTTGTTGcacagcagaATTTTTAG-TTTTTTTTTTTAAATTTTAATagaCC-AGTAT
JMCP003B07+           caacaacaaccacaccagataaTTTtcaaaaaaaaaaaatttaTTTAtaagaggttcata
JMCP001G11+           cTTGTTGTTGcacagcagaATTTTTAG-TTTTTTTTTTTAAATTTTAATagTCC-AGTAT
rJMCP010A01+                                                 AAATTTTAATTgTCC-AGTAT
rJMCP002D05+          cTTGTTGTTGcacagcagaATTTTTAGTTTTTTTTTTTTAAATTTTAATTCTCC-AGTAT
                      ____________________________________________________________
consensus             GTTGTTGTTGGTGTCGTCTATTTTTAGTTTTTTTTTTTTAAATTTTAATTCTCC-AGTAT
 
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JMCP001D06+           TTATTTTGATTTTCCAAAAGAACAAGTAAATGTTAACTTTATTCAATTTTTATTTTTCAA
JMCP003B07+           aaATTTTGtaaaaggttAtcttgtAGTtttacTTttCTTataggttTTTaataaaaTCAA
JMCP001G11+           TTATTTTGATTTTCCAAAAGAACAAGTAAATGTTAACTTTATCCAATTTTTATTTTTCAA
rJMCP010A01+          TTATTTTGATTTTCCAAAAGAACAAGTAAATGTTAACTTTATCCAATTTTTATTTTTCAA
rJMCP002D05+          TTATTTTGATTTTCCAAAAGAACAAGTAAATGTTAACTTTATCCAATTTTTATTTTTCAA
                      ____________________________________________________________
consensus             TTATTTTGATTTTCCAAAAGAACAAGTAAATGTTAACTTTATCCAATTTTTATTTTTCAA
 
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JMCP001D06+           AAAAAAAATCCGTTAATAAATGCACTTTAAATTATTTCaCATGAAGGCCTATAAATCCCT
JMCP003B07+           AAAAAAAATggcTTttTAAATGCACTTTA                               
JMCP001G11+           AAAAAAAATCCGTTAATAAATGCACTTTAAATTATTTCagtTGAAGGCCTATAAATCCCT
rJMCP010A01+          AAAAAAAATCCGTTAATAAATGCACTTTAAATTATTTCTCATGAAGGCCTATAAATCCCT
rJMCP002D05+          AAAAAAAATCCGTTAATAAATGCACTTTAAATTATTTCTCATGAAGGCCTATAAATCCCT
                      ____________________________________________________________
consensus             AAAAAAAATCCGTTAATAAATGCACTTTAAATTATTTCTCATGAAGGCCTATAAATCCCT