Contig 001525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015D01Sequence285001525 (3)
JMSF033H04Sequence659021108ref|XP_011087785.1|2e-05PREDICTED: LOW QUALITY PROTEIN: neurofilament heavy polypeptide [Sesamum indicu748001525 (3)
JMSF038G20Sequence683018987ref|XP_009419294.1|65.5PREDICTED: CUE domain-containing protein 5-like [Musa acuminata subsp. malaccen332001525 (3)

Alignment

This contig is upended


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rJMSF033H04+                                                                    TC
                      ____________________________________________________________
consensus                                                                       TC
 
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rJMSF033H04+          AGAGAATTACTCAGTAGAGGAGCTGGAAGAATTTTGATTGCGACTGCTTACAAGCAAAGT
                      ____________________________________________________________
consensus             AGAGAATTACTCAGTAGAGGAGCTGGAAGAATTTTGATTGCGACTGCTTACAAGCAAAGT
 
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rJMSF033H04+          GACTTAACATTGCCGTATTATGATTTATATTTTGACTTTGAATGAACATCCTGTTTGAAA
                      ____________________________________________________________
consensus             GACTTAACATTGCCGTATTATGATTTATATTTTGACTTTGAATGAACATCCTGTTTGAAA
 
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rJMSF033H04+          TTTCAGATGCTGCACAAGAGAAGAAAGACGGGCAACAAGATGGTGAGTTGGAAAAGAAGG
                      ____________________________________________________________
consensus             TTTCAGATGCTGCACAAGAGAAGAAAGACGGGCAACAAGATGGTGAGTTGGAAAAGAAGG
 
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rJMSF033H04+          ATGGTGGAGCTGCAGAGTCTAAAAGTGCAAAGAAGAAGAAAAAGAAGGATAAATCTTTGA
                      ____________________________________________________________
consensus             ATGGTGGAGCTGCAGAGTCTAAAAGTGCAAAGAAGAAGAAAAAGAAGGATAAATCTTTGA
 
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rJMSF033H04+          AGGAGGTGAAGGAATCACAAGACCAGCCTAATAACAGCTTAGATGCCCCTAATGCACCGG
                      ____________________________________________________________
consensus             AGGAGGTGAAGGAATCACAAGACCAGCCTAATAACAGCTTAGATGCCCCTAATGCACCGG
 
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rJMSF038G20+                         CTGANCAAGCAGAAGAAGAATCTGNTGTAAACGTGAAAGAAAAAC
rJMSF033H04+          AGGACCATGCAGAGACTGAGCAAGCAGAAGAAGAATCTGCTGTAAACGTGAAAGAAAAAC
                      ____________________________________________________________
consensus             AGGACCATGCAGAGACTGAGCAAGCAGAAGAAGAATCTGCTGTAAACGTGAAAGAAAAAC
 
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rJMSF038G20+          TTAAGAAGGTGGNTTCTGCAAAGAAGAAGAAATCTNGTAAAGATGCGGATGCAGCTGCTA
rJMSF033H04+          TTAAGAAGGTGGCTTCTGCAAAGAAGAAGAAATCTAGTAAAGATACGGATGCAGCTGCTA
                      ____________________________________________________________
consensus             TTAAGAAGGTGGCTTCTGCAAAGAAGAAGAAATCTAGTAAAGATGCGGATGCAGCTGCTA
 
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rJMSF038G20+          AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
rJMSF033H04+          AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
                      ____________________________________________________________
consensus             AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
 
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rJMSF038G20+          NGAAGAGCCANTNCAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCAT
rJMSF033H04+          AGAAGAGCCATTACAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
JMCP015D01-                         AACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
                      ____________________________________________________________
consensus             AGAAGAGCCATTACAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
 
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rJMSF038G20+          CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGNTTGGTAATAT        
rJMSF033H04+          CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
JMCP015D01-           CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
                      ____________________________________________________________
consensus             CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
 
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rJMSF033H04+          TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGG-TTTTTTGTCGACAGTC
JMCP015D01-           TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGGTTTTTTTGTCGACAGTC
                      ____________________________________________________________
consensus             TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGGTTTTTTTGTCGACAGTC
 
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rJMSF033H04+          TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAAC         
JMCP015D01-           TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAACATTGTGGTA
                      ____________________________________________________________
consensus             TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAACATTGTGGTA
 
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JMCP015D01-           CTTGATGTGTATCATAGTAGCACTTTCTTTTCTAGTATATGTCAATTTTGGTTTGAATGC
                      ____________________________________________________________
consensus             CTTGATGTGTATCATAGTAGCACTTTCTTTTCTAGTATATGTCAATTTTGGTTTGAATGC