Contig 001525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015D01Sequence285001525 (3)
JMSF033H04Sequence659021108ref|XP_011087785.1|2e-05PREDICTED: LOW QUALITY PROTEIN: neurofilament heavy polypeptide [Sesamum indicu748001525 (3)
JMSF038G20Sequence683018987ref|XP_009419294.1|65.5PREDICTED: CUE domain-containing protein 5-like [Musa acuminata subsp. malaccen332001525 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF033H04+ TC
                      ____________________________________________________________
consensus TC
 
. : . : . : . : . : . :
rJMSF033H04+ AGAGAATTACTCAGTAGAGGAGCTGGAAGAATTTTGATTGCGACTGCTTACAAGCAAAGT
                      ____________________________________________________________
consensus AGAGAATTACTCAGTAGAGGAGCTGGAAGAATTTTGATTGCGACTGCTTACAAGCAAAGT
 
. : . : . : . : . : . :
rJMSF033H04+ GACTTAACATTGCCGTATTATGATTTATATTTTGACTTTGAATGAACATCCTGTTTGAAA
                      ____________________________________________________________
consensus GACTTAACATTGCCGTATTATGATTTATATTTTGACTTTGAATGAACATCCTGTTTGAAA
 
. : . : . : . : . : . :
rJMSF033H04+ TTTCAGATGCTGCACAAGAGAAGAAAGACGGGCAACAAGATGGTGAGTTGGAAAAGAAGG
                      ____________________________________________________________
consensus TTTCAGATGCTGCACAAGAGAAGAAAGACGGGCAACAAGATGGTGAGTTGGAAAAGAAGG
 
. : . : . : . : . : . :
rJMSF033H04+ ATGGTGGAGCTGCAGAGTCTAAAAGTGCAAAGAAGAAGAAAAAGAAGGATAAATCTTTGA
                      ____________________________________________________________
consensus ATGGTGGAGCTGCAGAGTCTAAAAGTGCAAAGAAGAAGAAAAAGAAGGATAAATCTTTGA
 
. : . : . : . : . : . :
rJMSF033H04+ AGGAGGTGAAGGAATCACAAGACCAGCCTAATAACAGCTTAGATGCCCCTAATGCACCGG
                      ____________________________________________________________
consensus AGGAGGTGAAGGAATCACAAGACCAGCCTAATAACAGCTTAGATGCCCCTAATGCACCGG
 
. : . : . : . : . : . :
rJMSF038G20+ CTGANCAAGCAGAAGAAGAATCTGNTGTAAACGTGAAAGAAAAAC
rJMSF033H04+ AGGACCATGCAGAGACTGAGCAAGCAGAAGAAGAATCTGCTGTAAACGTGAAAGAAAAAC
                      ____________________________________________________________
consensus AGGACCATGCAGAGACTGAGCAAGCAGAAGAAGAATCTGCTGTAAACGTGAAAGAAAAAC
 
. : . : . : . : . : . :
rJMSF038G20+ TTAAGAAGGTGGNTTCTGCAAAGAAGAAGAAATCTNGTAAAGATGCGGATGCAGCTGCTA
rJMSF033H04+ TTAAGAAGGTGGCTTCTGCAAAGAAGAAGAAATCTAGTAAAGATACGGATGCAGCTGCTA
                      ____________________________________________________________
consensus TTAAGAAGGTGGCTTCTGCAAAGAAGAAGAAATCTAGTAAAGATGCGGATGCAGCTGCTA
 
. : . : . : . : . : . :
rJMSF038G20+ AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
rJMSF033H04+ AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
                      ____________________________________________________________
consensus AAGCTGCTGCCATGGAGGCAGCTGCAAGGAATGCAAGACTTGCTGCAGCTAAGAAGAAAG
 
. : . : . : . : . : . :
rJMSF038G20+ NGAAGAGCCANTNCAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCAT
rJMSF033H04+ AGAAGAGCCATTACAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
JMCP015D01- AACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
                      ____________________________________________________________
consensus AGAAGAGCCATTACAACCAGCAGCCAACGAGGTAAACTGTAACCCATAACCAGCAGCCA-
 
. : . : . : . : . : . :
rJMSF038G20+ CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGNTTGGTAATAT
rJMSF033H04+ CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
JMCP015D01- CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
                      ____________________________________________________________
consensus CTGATGAAATCCAATTCTCTGGGTACTACTGTCTGTAGAGGATTGGTAATATTTCATTGT
 
. : . : . : . : . : . :
rJMSF033H04+ TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGG-TTTTTTGTCGACAGTC
JMCP015D01- TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGGTTTTTTTGTCGACAGTC
                      ____________________________________________________________
consensus TCATTTTGCTGATGCGCAATAAGGTTTGAGTGCAAGGCTCTGGTTTTTTTGTCGACAGTC
 
. : . : . : . : . : . :
rJMSF033H04+ TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAAC
JMCP015D01- TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAACATTGTGGTA
                      ____________________________________________________________
consensus TAGATTAGGAGGTTAAAGTGTTTTGCTAGACAGTTTTGTTCAAACTTTAACATTGTGGTA
 
. : . : . : . : . : . :
JMCP015D01- CTTGATGTGTATCATAGTAGCACTTTCTTTTCTAGTATATGTCAATTTTGGTTTGAATGC
                      ____________________________________________________________
consensus CTTGATGTGTATCATAGTAGCACTTTCTTTTCTAGTATATGTCAATTTTGGTTTGAATGC