Contig 001521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001A11Sequence191001521 (15)
JMCP002B08Sequence193001521 (15)
JMCP003D04Sequence189001521 (15)
JMCP003G01Sequence178001521 (15)
JMCP004B07Sequence192001521 (15)
JMCP005F07Sequence189001521 (15)
JMCP006B04Sequence192001521 (15)
JMCP007G12Sequence191001521 (15)
JMCP008B06Sequence191001521 (15)
JMCP008H07Sequence189001521 (15)
JMCP009E04Sequence191001521 (15)
JMCP018C06Sequence175001521 (15)
JMCP018H11Sequence191001521 (15)
JMCP020D05Sequence191001521 (15)
JMCP020D11Sequence191001521 (15)

Alignment

This contig is upended


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rJMCP001A11+                                                            AGTTTCATTT
JMCP020D05+                                                             AGTTTCATTT
rJMCP002B08+                                                         CTAAGTTTCATTT
rJMCP006B04+                                                            GGTTTCATTT
rJMCP008B06+                                                            AGTTTCATTT
rJMCP004B07+                                                            GGTTTCATTT
rJMCP018H11+                                                            GGTTTCATTT
JMCP007G12+                                                             GGTTTCATTT
rJMCP009E04+                                                            AGTTTCATTT
rJMCP020D11+                                                            GGTTTCATTT
rJMCP005F07+                                                             GTTTCATTT
JMCP003D04+                                                              GTTTCATTT
JMCP008H07+                                                              GTTTCATTT
                      ____________________________________________________________
consensus                                                            CTAGGTTTCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP001A11+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
JMCP020D05+           CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP002B08+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP006B04+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP008B06+          CTTGTAGTTGTCTTTTTTGAACTATATTCGCAATTACAGGACTCTATATTTACAATTTCA
rJMCP004B07+          CTTGTAGTTGTCTTTTTTGAACTATATTCAgAtTTACAGGACTCTATATTTACAATTTCA
rJMCP018H11+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
JMCP007G12+           CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP009E04+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP020D11+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
rJMCP005F07+          CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
JMCP003D04+           CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGATTCTATATTTACAATTTCA
rJMCP018C06+                GTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
JMCP003G01+              GTAGTTGTCTTTTTTGAGCTATATTCACAATTACAGGACTCTATATTTACAATTTCA
JMCP008H07+           CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
                      ____________________________________________________________
consensus             CTTGTAGTTGTCTTTTTTGAACTATATTCACAATTACAGGACTCTATATTTACAATTTCA
 
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rJMCP001A11+          TAACTCTATATGCACAATTAAAGAACagaGAAAATTATATCATTGGTTGAGGAAGCGGTG
JMCP020D05+           TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP002B08+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP006B04+          TAACTCTATATGCACAATTAAAGAACagaGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP008B06+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP004B07+          TAACTCTATATGCAgttTTAAAGAACagactAAtTTATATCATTGGTTGAGGAAGCGGTG
rJMCP018H11+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
JMCP007G12+           TAACTCTATATGCACAATTAAAGAACagaGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP009E04+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTAAATCATTGGTTGAGGAAGCGGTG
rJMCP020D11+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP005F07+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
JMCP003D04+           TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
rJMCP018C06+          TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
JMCP003G01+           TAACTCTATATGCACAGTTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
JMCP008H07+           TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
                      ____________________________________________________________
consensus             TAACTCTATATGCACAATTAAAGAACTCTGAAAATTATATCATTGGTTGAGGAAGCGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP001A11+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
JMCP020D05+           TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP002B08+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP006B04+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP008B06+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP004B07+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGgAAGGTGCA
rJMCP018H11+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
JMCP007G12+           TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP009E04+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP020D11+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP005F07+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
JMCP003D04+           TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
rJMCP018C06+          TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
JMCP003G01+           TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
JMCP008H07+           TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA
                      ____________________________________________________________
consensus             TGGCACCGTTATTTCAAATGGCAGAATTGTTTTGGACTTCGGTCCACCTTGCAAGGTGCA