Contig 001520:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP004A10Sequence277001520 (10)
JMCP004E04Sequence278001520 (10)
JMCP004E11Sequence277001520 (10)
JMCP006G07Sequence277001520 (10)
JMCP008E08Sequence278001520 (10)
JMCP011H03Sequence232001520 (10)
JMCP012D10Sequence287001520 (10)
JMCP018F06Sequence290001520 (10)
JMCP018G02Sequence278001520 (10)
JMCP018G05Sequence279001520 (10)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP018G02+                                  GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP018F06+                                 GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP018G05+                               CGGTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP004E11+                                 GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP004E04+                                  TAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP006G07+                                 GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP012D10+                                 GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP011H03+                                 GTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
rJMCP004A10+                                 GTAATCTTGAACGTTTAAGCAGGATCAtacGCTTAGA
JMCP008E08+                                    AATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
                      ____________________________________________________________
consensus                                  CGGTAATCTTGAACGTTTAAGCAGGATCAATGGCTTAGA
 
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JMCP018G02+           TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP018F06+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP018G05+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP004E11+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP004E04+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP006G07+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATagcCGTTCGCACACACTT
rJMCP012D10+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP011H03+          TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
rJMCP004A10+          TTTAATCTCACAACCGCAagTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
JMCP008E08+           TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
                      ____________________________________________________________
consensus             TTTAATCTCACAACCGCATCTGGGTTGCCAATCACATTTAATTCGCGTTCGCACACACTT
 
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JMCP018G02+           AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP018F06+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP018G05+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP004E11+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP004E04+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP006G07+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP012D10+          AATTTAATCTAGACCATTAAAAtat-atttactgagggggggtaaaGATCTCACGTTCTC
rJMCP011H03+          AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
rJMCP004A10+          AATTTAATCTAGACCATTAAAAATATTAAtTGAATGCACAgttTTTGATCTCACGTTCTC
JMCP008E08+           AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
                      ____________________________________________________________
consensus             AATTTAATCTAGACCATTAAAAATATTAAATGAATGCACACAATTTGATCTCACGTTCTC
 
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JMCP018G02+           ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP018F06+          ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP018G05+          ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP004E11+          ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP004E04+          ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP006G07+          ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP012D10+          ATTAACAAGTGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP011H03+          ATTAACAAGTGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
rJMCP004A10+          ATTAAgttGTGTTCAATAGTCATAGGAgttAAtGTGtttTTAAATCTatagtAATATGTA
JMCP008E08+           ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
                      ____________________________________________________________
consensus             ATTAACAAGAGTTCAATAGTCATAGGACAAAAAGTGAAATTAAATCTTATCAAATATGTA
 
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JMCP018G02+           ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA
rJMCP018F06+          ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAAT        
rJMCP018G05+          ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA
rJMCP004E11+          ATGCATGAAAAATATGACAaCTACGGAGTATTTGAAAATGAGAGGTAAAAtTTAAATGAA
rJMCP004E04+          ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA
rJMCP006G07+          ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA
rJMCP012D10+          ATGCATGAAAAATATGACATCTACGGAGTATaTGAAAATGAGAGGTAAAtta        
rJMCP011H03+          ATGCATGAAAAATAT                                             
rJMCP004A10+          ATGCATGAAAAATATGAgtagaACGGAGTATTTcttAtTGAGAGGTAAtttTTAAATGAA
JMCP008E08+           ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA
                      ____________________________________________________________
consensus             ATGCATGAAAAATATGACATCTACGGAGTATTTGAAAATGAGAGGTAAAAATTAAATGAA