Contig 001519:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP017G05+                                                           TTTTGCATTTG
                      ____________________________________________________________
consensus                                                              TTTTGCATTTG
 
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rJMCP017G05+          GTCTATTTGCAAGTCCTGCTGCTGGAATATGTACCTTTGCTTTCCAGGTAAGATCTTTGT
JMCP019F05+                                                 GCTTTCCAGGTAActagaaaGT
                      ____________________________________________________________
consensus             GTCTATTTGCAAGTCCTGCTGCTGGAATATGTACCTTTGCTTTCCAGGTAAGATCTTTGT
 
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rJMCP017G05+          TTTACCCTGTGCTACCATGTAATATGCTGACTGTAAAACAAAATTAACAATTTTTAGTTA
JMCP019F05+           TTTAgggacacgaACCATGTttatacgacACTGTAAAACAAAATTttgAATTTTTAGTTA
JMCP019A01+                                          TGTAAAACAAAATTAACAATTTTTAGTat
JMCP008B04+                                          TGTAAAACAAAAaattgttaTTTTAGTTt
                      ____________________________________________________________
consensus             TTTACCCTGTGCTACCATGTAATATGCTGACTGTAAAACAAAATTAACAATTTTTAGTTA
 
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rJMCP017G05+          ACTGCTTTGAAGAAAAGGTGAAAAAGGTGCATTTGCATGCATATGAATCTTGTAGTGAAC
JMCP019F05+           ACTGCTTTGAAGAAAAGcacAAAAAGGTGCATTTGCATGCATATGAATCTTGTAGTGAAC
JMCP019A01+           tgTGgaaacttcAAAAGcacAAAAAGGTGCATTTGCATGCATAaGttaCaacTAGTGAAC
JMCP008B04+           tgTGCTaaGAAGAAAAGGTGAAAAAGGTGCATTTGCATGCATATGAATCTTGTAGTGAAC
                      ____________________________________________________________
consensus             ACTGCTTTGAAGAAAAGGTGAAAAAGGTGCATTTGCATGCATATGAATCTTGTAGTGAAC
 
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rJMCP017G05+          ATGTCATTAATTTCGTTATATGATCTCGGTTTTGACTAAAGCCTTCCACTGTTATGAATA
JMCP019F05+           ATGTCATTAATTTCGTTATATGATCTCGGTTTTGACTAAAGCCTTCCACTGTTATGAATA
JMCP019A01+           ATGTCATTAATTTCGTTATATGATCTCGGTTaacACTAAAGgCTTCCACTGTTATGAATA
JMCP008B04+           ATGTCATTAATTTCGTTATATGATCTCGGTTTTGACTAAAGCCTTCCACTGTTATGAATA
                      ____________________________________________________________
consensus             ATGTCATTAATTTCGTTATATGATCTCGGTTTTGACTAAAGCCTTCCACTGTTATGAATA
 
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rJMCP017G05+          TATTTAAGAAACTTTAGTTTATCTGATGTTATTTTGTACACTGAAGCTCAATGAAGTATA
JMCP019F05+           TATTTAAGAAACTTTAGTTTGTCTGATGTTATTTTGTACACTGAAGCTCAATGAAGTATA
JMCP019A01+           TATTTAAGAAACTTTAGTTTGTCTGATGTTATTTTGTACACTGAAGCTCAATGAAGTATA
JMCP008B04+           TATTTAAGAAACTTTAGTTTATCTGATGTTATTTTGTACACTGAAGCTCAATGAAGTATA
                      ____________________________________________________________
consensus             TATTTAAGAAACTTTAGTTTGTCTGATGTTATTTTGTACACTGAAGCTCAATGAAGTATA
 
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rJMCP017G05+          CTGCGTCATGTATCTTTACTACTTAATCTGATTTAGGAAAAAGATTGTCACGTTATCTTA
JMCP019F05+           CTGCGTCATGTATCTTTACTACTTAATCTGATTTAGGAAAGAGATTGTCACGTTATCTTA
JMCP019A01+           CTGCGTCATGTATCTTTACTACTTAATCTGATTTAGGAAAGAGATTGTCACGTTATCTTA
JMCP008B04+           CTGCGTCATGTATCTTTACTACTTAATCTGATTTAGGAAAAAGATTGTCACGTTATCTTA
                      ____________________________________________________________
consensus             CTGCGTCATGTATCTTTACTACTTAATCTGATTTAGGAAAGAGATTGTCACGTTATCTTA
 
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rJMCP017G05+          ATACGGAGTATTAGTTTGAGTTCCTAGATTTCCATGAATGACAACTAGGCCATCTATGCT
JMCP019F05+           ATACGGAGTATTAGTTTGAGTTCCTAGATTTCCATGAATGACAACTAGGCCATCTATGCT
JMCP019A01+           ATACGGAGTATTAGTTTGAGTTCCTAGATTTCCATGAATGACAACTAGGCCATCTATGCT
JMCP008B04+           ATACGGAGTATTAGTTTGAGTTCCTAGATTTCCATGAATGACAACTAGGCCATCTATGCT
                      ____________________________________________________________
consensus             ATACGGAGTATTAGTTTGAGTTCCTAGATTTCCATGAATGACAACTAGGCCATCTATGCT
 
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rJMCP017G05+          TAGAGTGTACAAGATACTGTGTTAGTTTGTACTTGGGAATTTATCTTCTTCTCCCTAAAT
JMCP019F05+           TAGAGTGTACAAGATACTGTGTTAGTTTGTACCTGGGAATTTATCTTCTTCTCCCTAAAT
JMCP019A01+           TAGAGTGTACAAGATACTGTGTTAGTTTGTACCTGGGAATTTATCTTCTTCTCCCTAAAT
JMCP008B04+           TAGAGTGTACAAGATACTGTGTTAGTTTGTACTTGGGAATTTATCTTCTTCTCCCTAAAT
                      ____________________________________________________________
consensus             TAGAGTGTACAAGATACTGTGTTAGTTTGTACTTGGGAATTTATCTTCTTCTCCCTAAAT
 
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rJMCP017G05+          TGGCTCTCATTTAGCATATTCAATAGCTTACAATGGAAAGCCATAATTTATTACATTTGC
JMCP019F05+           TGGCTCTCATTTAGCATATTCAATAGCTTACAATGGAAAGCCATAATTTATTACATTTGC
JMCP019A01+           TGGCTCTCATTTAGCATATTCAATAGCTTACAATGGAAAGCCATAATTTATTACATTTGC
JMCP008B04+           TGGCTCTCATTTAGCATATTCAATAGCTTACAATGGAAAGCCATAATTTATTACATTTGC
                      ____________________________________________________________
consensus             TGGCTCTCATTTAGCATATTCAATAGCTTACAATGGAAAGCCATAATTTATTACATTTGC
 
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rJMCP017G05+          GAAAAACAAGGTGGTTGTAACTATGGGCTGCTTGCTGTTAGAACTTTTTGCCCCTTTTCA
JMCP019F05+           GAAAAACAAGGTGGTTGTAACTATGGGCTGCTTGCTGTTAGAACTTTTTGCCCCTTTTCA
JMCP019A01+           GAAAAACAAGGTGGTTGTAACTATGGGCTGCTTGCTGTTAGAACTTTTTGCCCCTTTTCA
JMCP008B04+           GAAAAACAAGGTGGTTGTAACTATGGGCTGCTTGCTGTTAGAACTTTTTGCCCCTTTTCA
                      ____________________________________________________________
consensus             GAAAAACAAGGTGGTTGTAACTATGGGCTGCTTGCTGTTAGAACTTTTTGCCCCTTTTCA