| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP002A01 | Sequence | 498 | 001518 (10) | ref|XP_002311516.1| | 1e-19 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP004A03 | Sequence | 507 | 001518 (10) | ref|XP_002311516.1| | 5e-19 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP004B05 | Sequence | 383 | 001518 (10) | ref|XP_002311516.1| | 6e-13 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP004G03 | Sequence | 507 | 001518 (10) | ref|XP_002311516.1| | 1e-19 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP004H04 | Sequence | 509 | 001518 (10) | ref|XP_002311516.1| | 1e-19 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP007F04 | Sequence | 506 | 001518 (10) | ref|XP_002311516.1| | 1e-19 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP007G04 | Sequence | 508 | 001518 (10) | ref|XP_002311516.1| | 2e-18 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP017E11 | Sequence | 506 | 001518 (10) | ref|XP_002311516.1| | 2e-18 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP017G07 | Sequence | 506 | 001518 (10) | ref|XP_002311516.1| | 9e-20 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
| JMCP017G12 | Sequence | 506 | 001518 (10) | ref|XP_002311516.1| | 9e-20 | high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob | |||||
This contig is upended
. : . : . : . : . : . :
rJMCP004H04+ CTCATAATTTATCACCTTGGAACTAACTA
rJMCP017G12+ ATAATTTATCACCTTGGAACTAACTA
rJMCP017G07+ ATAATTTATCACCTTGGAACTAACTA
rJMCP007F04+ TAATTTATCACCTTGGAACTAACTA
rJMCP017E11+ TAATTTATCACCTTGGAACTAACTA
rJMCP002A01+ TCACCTTccttgattCaA
rJMCP004G03+ ATAATTTATCACCTTGGAACTAACTA
rJMCP004A03+ TAATTTATCACCTTGGAACTAACTA
JMCP007G04+ ATAATTTATCACCTTGGAACTAACTA
____________________________________________________________
consensus CTCATAATTTATCACCTTGGAACTAACTA
. : . : . : . : . : . :
rJMCP004H04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP017G12+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGGGTTGAACGAGAAGGGTGGGTC
rJMCP017G07+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGGGTTGAACGAGAAGGGTGGGTC
rJMCP007F04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP017E11+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP002A01+ TTTTGTTGaacaTatcgactattacGCGGCGATTGAGGAGTTGAtgcAGAAGGGTGGGTC
rJMCP004G03+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
rJMCP004B05+ AAGGcacGGTC
rJMCP004A03+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
JMCP007G04+ TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
____________________________________________________________
consensus TTTTGTTGTTGTTTAGCTGATAATGGCGGCGATTGAGGAGTTGAACGAGAAGGGTGGGTC
. : . : . : . : . : . :
rJMCP004H04+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017G12+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017G07+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP007F04+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP017E11+ CACAAAATCGGACATTTCGGGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP002A01+ CACAAAATCGGACATTTCcAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP004G03+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
rJMCP004B05+ CAgttttaCGctgtaaagctcGgAGATAGAGcgccgcgtgcGCcGtctcgacggGcctag
rJMCP004A03+ CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
JMCP007G04+ CACAAAAagGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
____________________________________________________________
consensus CACAAAATCGGACATTTCGAGGCAGATAGAGGCGGCGCACGGCGGAGAGCTGCCGGGATC
. : . : . : . : . : . :
rJMCP004H04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017G12+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017G07+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP007F04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP017E11+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP002A01+ TCACGCCACtCTGgacACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGgaccTGTT
rJMCP004G03+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
rJMCP004B05+ agtgcgCtgtgacgactgGgtgatggagctgttctacttcgAATCCGGGgtcgaccTGaa
rJMCP004A03+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
JMCP007G04+ TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
____________________________________________________________
consensus TCACGCCACACTGCTGACGCACTACCTCGACAAGATGAAGCAATCCGGGCAGCTGGTGTT
. : . : . : . : . : . :
rJMCP004H04+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017G12+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017G07+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP007F04+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP017E11+ GGTGAAGAACAACTACATGAGGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP002A01+ GGTGAAGAACAtgaACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP004G03+ GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
rJMCP004B05+ ccacGAGAAgttgatgtacttGCCGGACCCAAATcCGCgGCgcgcgCGGGGggGCGGggc
rJMCP004A03+ GGTGGAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
JMCP007G04+ GGTGAAGAACAtCTACAAGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
____________________________________________________________
consensus GGTGAAGAACAACTACATGAAGCCGGACCCAAATGCGCCGCCGCGCCGGGGCCGCGGCCG
. : . : . : . : . : . :
rJMCP004H04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017G12+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017G07+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP007F04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP017E11+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP002A01+ TCCGCgcAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP004G03+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
rJMCP004B05+ aCCGggcttcggcttAGCGCCagatCCGCCGGccatgGTCCCCCgcggcgCcgcaggagc
rJMCP004A03+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
JMCP007G04+ TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
____________________________________________________________
consensus TCCGCCGAAGCCGAAAGCGCCTCTACCGCCGGGGTACGTCCCCCCGCCGCCGCGTCCTCG
. : . : . : . : . : . :
rJMCP004H04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017G12+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017G07+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP007F04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP017E11+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP002A01+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP004G03+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
rJMCP004B05+ accgtccggcgggttcgCcCcacACCCcaagcgTCgccaccaaagGCggtacttGAAAGg
rJMCP004A03+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
JMCP007G04+ TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
____________________________________________________________
consensus TGGCAGGCCGCCCAAGCCGCGTGACCCGTTCGCTCCGGTGGTTTCGCCCATGAAGAAAGC
. : . : . : . : . : . :
rJMCP004H04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017G12+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017G07+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP007F04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP017E11+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP002A01+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP004G03+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
rJMCP004B05+ gaCCGCCGcgcGCGcgagaccggcctAACcacGAGGGCCCggcttGTCCTCCAgagggcC
rJMCP004A03+ CTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAGGGCCCCCGAAGTCCTCCACTCCCGC
JMCP007G04+ TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
____________________________________________________________
consensus TTCCGCCGGCGGCGGCTCTGGCCGGAAACGTGGAAGGCCCCCGAAGTCCTCCACTCCCGC
. : . : . : . : . : . :
rJMCP004H04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017G12+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017G07+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP007F04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP017E11+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP002A01+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP004G03+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
rJMCP004B05+ gGCCGCTCCCCC
rJMCP004A03+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
JMCP007G04+ CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA
____________________________________________________________
consensus CGCCGCTCCCCCTCCAGCCAGCGGACCTCCGAGAGGGCGAGGCAGGCCGCCGAAGGTGAA