Contig 001512:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049G03Sequence682002460 (8)ref|XP_009771911.1|8e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r759001512 (2)ref|XP_009610701.1|2e-84PREDICTED: cellulose synthase-like protein G3 [Nicotiana tomentosiformis]
JMSF053G15Sequence649016903ref|XP_009595256.1|1e-73PREDICTED: cellulose synthase-like protein G3, partial [Nicotiana tomentosiform919001512 (2)ref|XP_009610701.1|4e-99PREDICTED: cellulose synthase-like protein G3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF053G15+ GNCCAGCTTTCCTGGGAGA
                      ____________________________________________________________
consensus GNCCAGCTTTCCTGGGAGA
 
. : . : . : . : . : . :
rJMSF049G03+ GAGTAGGCTTAT
rJMSF053G15+ TATACCCATTTTCTTTGGGTGATGCCTTGAACCAAAACAAGAGATGGGGAGTAGGCTTAT
                      ____________________________________________________________
consensus TATACCCATTTTCTTTGGGTGATGCCTTGAACCAAAACAAGAGATGGGGAGTAGGCTTAT
 
. : . : . : . : . : . :
rJMSF049G03+ TGGAAGTGGCTCTCAACAAATAC-CCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
rJMSF053G15+ TGGAAGTGGCTCTCAACAAATACTCCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
                      ____________________________________________________________
consensus TGGAAGTGGCTCTCAACAAATACTCCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
 
. : . : . : . : . : . :
rJMSF049G03+ TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
rJMSF053G15+ TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
                      ____________________________________________________________
consensus TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
 
. : . : . : . : . : . :
rJMSF049G03+ TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
rJMSF053G15+ TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
                      ____________________________________________________________
consensus TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
 
. : . : . : . : . : . :
rJMSF049G03+ CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
rJMSF053G15+ CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
                      ____________________________________________________________
consensus CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
 
. : . : . : . : . : . :
rJMSF049G03+ GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
rJMSF053G15+ GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
                      ____________________________________________________________
consensus GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
 
. : . : . : . : . : . :
rJMSF049G03+ GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
rJMSF053G15+ GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
                      ____________________________________________________________
consensus GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
 
. : . : . : . : . : . :
rJMSF049G03+ TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
rJMSF053G15+ TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
                      ____________________________________________________________
consensus TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
 
. : . : . : . : . : . :
rJMSF049G03+ AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTGCCCATCG
rJMSF053G15+ AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTTCCCATCG
                      ____________________________________________________________
consensus AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTTCCCATCG
 
. : . : . : . : . : . :
rJMSF049G03+ CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGGCG
rJMSF053G15+ CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGACG
                      ____________________________________________________________
consensus CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGGCG
 
. : . : . : . : . : . :
rJMSF049G03+ GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
rJMSF053G15+ GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
                      ____________________________________________________________
consensus GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
 
. : . : . : . : . : . :
rJMSF049G03+ ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
rJMSF053G15+ ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
                      ____________________________________________________________
consensus ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
 
. : . : . : . : . : . :
rJMSF049G03+ AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
rJMSF053G15+ AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
                      ____________________________________________________________
consensus AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
 
. : . : . : . : . : . :
rJMSF049G03+ TTGGAAATTAATTTGTAGGGAAAGGATA
rJMSF053G15+ TTGGAAATTAATTTGTAGGGAAAGGATACACGCATGATGTTAGGTTGTTTTTACTTTTTA
                      ____________________________________________________________
consensus TTGGAAATTAATTTGTAGGGAAAGGATACACGCATGATGTTAGGTTGTTTTTACTTTTTA
 
. : . : . : . : . : . :
rJMSF053G15+ AATAACATTGTAATATATAATAGTGCAAAACTAAAATATGTACAACTTCAATAATGAGGT
                      ____________________________________________________________
consensus AATAACATTGTAATATATAATAGTGCAAAACTAAAATATGTACAACTTCAATAATGAGGT