Contig 001512:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049G03Sequence682002460 (8)ref|XP_009771911.1|8e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r759001512 (2)ref|XP_009610701.1|2e-84PREDICTED: cellulose synthase-like protein G3 [Nicotiana tomentosiformis]
JMSF053G15Sequence649016903ref|XP_009595256.1|1e-73PREDICTED: cellulose synthase-like protein G3, partial [Nicotiana tomentosiform919001512 (2)ref|XP_009610701.1|4e-99PREDICTED: cellulose synthase-like protein G3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF053G15+                                                   GNCCAGCTTTCCTGGGAGA
                      ____________________________________________________________
consensus                                                      GNCCAGCTTTCCTGGGAGA
 
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rJMSF049G03+                                                          GAGTAGGCTTAT
rJMSF053G15+          TATACCCATTTTCTTTGGGTGATGCCTTGAACCAAAACAAGAGATGGGGAGTAGGCTTAT
                      ____________________________________________________________
consensus             TATACCCATTTTCTTTGGGTGATGCCTTGAACCAAAACAAGAGATGGGGAGTAGGCTTAT
 
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rJMSF049G03+          TGGAAGTGGCTCTCAACAAATAC-CCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
rJMSF053G15+          TGGAAGTGGCTCTCAACAAATACTCCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
                      ____________________________________________________________
consensus             TGGAAGTGGCTCTCAACAAATACTCCCCCCTCACATATGGCACTCGCACTGCTGGCTTTA
 
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rJMSF049G03+          TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
rJMSF053G15+          TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
                      ____________________________________________________________
consensus             TAATGGGATACTGCTACACTCACCTTGCTTTTTGGCCCTTTTGGCTCTTCCCTGTCACCA
 
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rJMSF049G03+          TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
rJMSF053G15+          TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
                      ____________________________________________________________
consensus             TTTATTCCTACCTTCCTCAACTCACTCTCCTCAATGGCCTCCCCATCTTCCCAAAGGCGT
 
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rJMSF049G03+          CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
rJMSF053G15+          CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
                      ____________________________________________________________
consensus             CGGACACTATGTGGATTCTTGTATACGCTTTTGTATTCATCGGAGCAAACGCGCAAGACT
 
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rJMSF049G03+          GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
rJMSF053G15+          GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
                      ____________________________________________________________
consensus             GCTACGACTACATTTCGACCGGCGGGACATGGCGGCGGTGGTGGAGCGACCAAAGGATGT
 
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rJMSF049G03+          GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
rJMSF053G15+          GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
                      ____________________________________________________________
consensus             GGCTAATGAGGGCGCTGTCCTCCTACTTATTCGCCGCCGTCGAGTTCGTCAGCAAGCAGC
 
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rJMSF049G03+          TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
rJMSF053G15+          TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
                      ____________________________________________________________
consensus             TGGGCATATCCAACCAAGGGTTCACGGTGACGAGCAAAGTGGTGGACGACGAGCAAGGGA
 
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rJMSF049G03+          AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTGCCCATCG
rJMSF053G15+          AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTTCCCATCG
                      ____________________________________________________________
consensus             AGCGGTACGAGCAGGGAGTTTTCGAGTTCGGCGCTGCGTCTCCGTTGTTTGTTCCCATCG
 
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rJMSF049G03+          CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGGCG
rJMSF053G15+          CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGACG
                      ____________________________________________________________
consensus             CCGCCGCCGCAATCATCAACCTCGCCGCGTTCCTCCGGGGGATTGGGCTGGTTCTCGGCG
 
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rJMSF049G03+          GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
rJMSF053G15+          GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
                      ____________________________________________________________
consensus             GCGGGAGGGGTTTGGATTTGTTTGTCGTTCAGATTTTTCTGGCGGGGTATGGGGTGTTGA
 
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rJMSF049G03+          ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
rJMSF053G15+          ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
                      ____________________________________________________________
consensus             ACTCTTTGCCGTTCTATCATGGGATGTTGTTGAGAAGTGATAAGGGAAGGATGCCCACTA
 
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rJMSF049G03+          AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
rJMSF053G15+          AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
                      ____________________________________________________________
consensus             AGATCACTCTCATTTCTAGTTTTATTGCTTTGGCTATTTACATTTCATTTTCTTTCTTTC
 
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rJMSF049G03+          TTGGAAATTAATTTGTAGGGAAAGGATA                                
rJMSF053G15+          TTGGAAATTAATTTGTAGGGAAAGGATACACGCATGATGTTAGGTTGTTTTTACTTTTTA
                      ____________________________________________________________
consensus             TTGGAAATTAATTTGTAGGGAAAGGATACACGCATGATGTTAGGTTGTTTTTACTTTTTA
 
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rJMSF053G15+          AATAACATTGTAATATATAATAGTGCAAAACTAAAATATGTACAACTTCAATAATGAGGT
                      ____________________________________________________________
consensus             AATAACATTGTAATATATAATAGTGCAAAACTAAAATATGTACAACTTCAATAATGAGGT