Contig 001511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048I14Sequence418001511 (3)
JMSF052J17Sequence541001511 (3)ref|XP_009592074.1|5e-102PREDICTED: scarecrow-like protein 23 [Nicotiana tomentosiformis]923001511 (3)ref|XP_009592074.1|2e-68PREDICTED: scarecrow-like protein 23 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF052J17-                                                                    GGC
                      ____________________________________________________________
consensus                                                                      GGC
 
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JMSF052J17-           CGCCATGGCTCAGATCCTGCTCGACGATGGTGATTAGCTTCGGGCGGAGCAAAGTCAACA
                      ____________________________________________________________
consensus             CGCCATGGCTCAGATCCTGCTCGACGATGGTGATTAGCTTCGGGCGGAGCAAAGTCAACA
 
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JMSF052J17-           GTCTCAGCGTCCCGAAATCGCTGCCGGTGACGTCGTAAAGGCAGTGGTGCATCCAGTGCA
                      ____________________________________________________________
consensus             GTCTCAGCGTCCCGAAATCGCTGCCGGTGACGTCGTAAAGGCAGTGGTGCATCCAGTGCA
 
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JMSF052J17-           CCACCGTGGTCTCGCCGATTTTCACCCCGAGTTGACTCGGGTCTGTTATGTTCCCGATTT
                      ____________________________________________________________
consensus             CCACCGTGGTCTCGCCGATTTTCACCCCGAGTTGACTCGGGTCTGTTATGTTCCCGATTT
 
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JMSF052J17-           TTCCCTCCAGCGGGCGGAACTCGAAGGGGAGGCCGAGCGAGGTCGCGAACTCGGCGAGTC
                      ____________________________________________________________
consensus             TTCCCTCCAGCGGGCGGAACTCGAAGGGGAGGCCGAGCGAGGTCGCGAACTCGGCGAGTC
 
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JMSF052J17-           GCCGGCCGGTGGATTCCAGGAGCTCGATGGAGGATCCGACGCCGGTGATCTTGATAGAGC
                      ____________________________________________________________
consensus             GCCGGCCGGTGGATTCCAGGAGCTCGATGGAGGATCCGACGCCGGTGATCTTGATAGAGC
 
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JMSF052J17-           GGATCTTGCGGCTGCGGGAGGCGAGGATGTGGAACAATCCGGGCCACTGGAGGCCCTGCA
rJMSF052J17+                                               TCCGGGCCACTGGAGGCCCTGCA
                      ____________________________________________________________
consensus             GGATCTTGCGGCTGCGGGAGGCGAGGATGTGGAACAATCCGGGCCACTGGAGGCCCTGCA
 
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JMSF052J17-           TGATGTCTAGGTCGATGACGTGGACGTGATCCTCGCCGTCGAGCGCCTGGAAGATGGCCT
rJMSF052J17+          TGATGTCTAGGTCGATGACGTGGACGTGATCCTCGCCGTCGAGCGCCTGGAAGATGGCCT
                      ____________________________________________________________
consensus             TGATGTCTAGGTCGATGACGTGGACGTGATCCTCGCCGTCGAGCGCCTGGAAGATGGCCT
 
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JMSF052J17-           GATTGGCGGTGAAGTGGGAGAATTTCACAAGGGGGCTGATGGAGTTATAGCTCTGTAAGG
rJMSF052J17+          GATTGGCGGTGAAGTGGGAGAATTTCACAAGGGGGCTGATGGAGTTATAGCTCTGTAAGG
                      ____________________________________________________________
consensus             GATTGGCGGTGAAGTGGGAGAATTTCACAAGGGGGCTGATGGAGTTATAGCTCTGTAAGG
 
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JMSF052J17-           CAGCGAAGAGTTTCTGAGAGTGGGTTAGGGTTAGGGTTTTGAGGGTGAGAGGCGAGTA  
rJMSF052J17+          CAGCGAAGAGTTTCTGAGAGTGGGTTAGGGTTAGGGTTTTGAGGGTGAGAGGCGAGTAGG
                      ____________________________________________________________
consensus             CAGCGAAGAGTTTCTGAGAGTGGGTTAGGGTTAGGGTTTTGAGGGTGAGAGGCGAGTAGG
 
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rJMSF052J17+          AGCCGAGGTAGGAGCTAATAATCCGCGCCGAGAGTCCCTCGGCGAAATAAGCCGCGACGC
                      ____________________________________________________________
consensus             AGCCGAGGTAGGAGCTAATAATCCGCGCCGAGAGTCCCTCGGCGAAATAAGCCGCGACGC
 
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rJMSF052J17+          GCTCCGCCGACGAGCCGAACGGCGACGAGAGCTCCGCGATCTCCGGCAACAGATTGCTAG
                      ____________________________________________________________
consensus             GCTCCGCCGACGAGCCGAACGGCGACGAGAGCTCCGCGATCTCCGGCAACAGATTGCTAG
 
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rJMSF052J17+          CGTCGTCGAGGTTATCCATGGCCACACACTCGGCGCATTGTAGCAGCAGGCCCAGTAAGC
                      ____________________________________________________________
consensus             CGTCGTCGAGGTTATCCATGGCCACACACTCGGCGCATTGTAGCAGCAGGCCCAGTAAGC
 
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rJMSF052J17+          GAAGACCCGTTGACTCGGTATCCATGACCTCCTCCTCCTCCTCTTCCTCCCCCTTCTCGC
                      ____________________________________________________________
consensus             GAAGACCCGTTGACTCGGTATCCATGACCTCCTCCTCCTCCTCTTCCTCCCCCTTCTCGC
 
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JMFF048I14+                         TCGCCGGAGGAAGACAAATGACGAGGCCTCTTAAACGAGGAATCCT
rJMSF052J17+          CGGAGACAGAAGGATCGCCGGAGGAAGACAAATGACGAGGCCTCTTAAACGAGGAATCCT
                      ____________________________________________________________
consensus             CGGAGACAGAAGGATCGCCGGAGGAAGACAAATGACGAGGCCTCTTAAACGAGGAATCCT
 
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JMFF048I14+           CCGCCGTCGCAGCTGCGCCGCCGAGGTCAATCACAGAACGCTTGGAAGCCATAGAAGAAG
rJMSF052J17+          CCGCCGTCGCAGCTGCGCCGCCGAGGTCAATCACAGAACGCTTGGAAGCCATAGAAGAAG
                      ____________________________________________________________
consensus             CCGCCGTCGCAGCTGCGCCGCCGAGGTCAATCACAGAACGCTTGGAAGCCATAGAAGAAG
 
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JMFF048I14+           AGAGATTGGGGCTGTTGGGGCAATTATTACTATTATTAGGGTTAGGTGAGAAATGGAGAC
rJMSF052J17+          AGAGATTGGGGCTGTTGGGGCAATTATTACTATTATTAGGGTTAGGTGAGAAATGGAGAC
                      ____________________________________________________________
consensus             AGAGATTGGGGCTGTTGGGGCAATTATTACTATTATTAGGGTTAGGTGAGAAATGGAGAC
 
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JMFF048I14+           TTTGAAGCATGATCACAAAGAAAGAGGAGCTATAAGGGAGAAGAAAACAAATTGTCAGAG
rJMSF052J17+          TTTGAAGCATGATCACAAAGAAAGAGGAGCTATAAGGGAGAAGAAAACAAATTGTCAGAG
                      ____________________________________________________________
consensus             TTTGAAGCATGATCACAAAGAAAGAGGAGCTATAAGGGAGAAGAAAACAAATTGTCAGAG
 
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JMFF048I14+           ATAGCCATGTTCAGGCTGAGCAGAAAGGAGAAGGGTGCAGGCAGGGGGTGGGGAAGATGA
rJMSF052J17+          ATAGCCATGTTCAGGCTGAGCAGAAAGGAGAAGGGTGCAGGCAGGGGGTGGGGAAGATGA
                      ____________________________________________________________
consensus             ATAGCCATGTTCAGGCTGAGCAGAAAGGAGAAGGGTGCAGGCAGGGGGTGGGGAAGATGA
 
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JMFF048I14+           TGACGAGGGAGAAGAGAGAGAGAGAAAGAGGGATTGGAATGAGTGGCGGAGAAGATAAAG
rJMSF052J17+          TGACGAGGGAGAAGAGAGAGAGAGAAAGAGGGATTGGAATGAGTGGCGGAGAAGATAAAG
                      ____________________________________________________________
consensus             TGACGAGGGAGAAGAGAGAGAGAGAAAGAGGGATTGGAATGAGTGGCGGAGAAGATAAAG
 
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JMFF048I14+           GAAAAGGTAAGGAACTTTTTGGAATTATCGATGTTTGCGATACGCATCAGAGTGAGGCTT
rJMSF052J17+          GAAAAGGTAAGGAACTTTTTGGAATTATCGATGTTTGCGATACGCATCAGAGTGAGGCTT
                      ____________________________________________________________
consensus             GAAAAGGTAAGGAACTTTTTGGAATTATCGATGTTTGCGATACGCATCAGAGTGAGGCTT
 
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JMFF048I14+           GTTCCTTG                                                    
rJMSF052J17+          GTTCCTTGTGTTGTAGACTTCTTGTTATTAGGATAATAATAATAATAATAGGGGTCTCGT
                      ____________________________________________________________
consensus             GTTCCTTGTGTTGTAGACTTCTTGTTATTAGGATAATAATAATAATAATAGGGGTCTCGT