| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025N21 | Sequence | 535 | 001509 (5) | ref|XP_009622454.1| | 122 | PREDICTED: uncharacterized protein LOC104113850 [Nicotiana tomentosiformis] | 771 | 001509 (5) | ref|XP_009622454.1| | 79.0 | PREDICTED: uncharacterized protein LOC104113850 [Nicotiana tomentosiformis] |
| JMSF033C18 | Sequence | 520 | 001509 (5) | ref|XP_009622454.1| | 121 | PREDICTED: uncharacterized protein LOC104113850 [Nicotiana tomentosiformis] | 722 | 001509 (5) | ref|XP_009622454.1| | 81.3 | PREDICTED: uncharacterized protein LOC104113850 [Nicotiana tomentosiformis] |
| JMSF052E01 | Sequence | 647 | 006887 (6) | ref|XP_009605279.1| | 2e-13 | PREDICTED: proline-rich receptor-like protein kinase PERK10 [Nicotiana tomentos | 898 | 001509 (5) | ref|XP_009622454.1| | 80.5 | PREDICTED: uncharacterized protein LOC104113850 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF025N21- GGAGGCCAGAGAGAAAATCAAAATTAAAGATGAAGA
JMSF033C18- AAAGATGAAGA
____________________________________________________________
consensus GGAGGCCAGAGAGAAAATCAAAATTAAAGATGAAGA
. : . : . : . : . : . :
JMSF025N21- AGAGTCATGGTGAGGAAGAAGAAGCTATGGATTGGTATTCATGGCTGTCAAAGTCTTCTT
JMSF033C18- AGAGTCATGGTGAGGAAGAAGAAGCTATGGATTGGTATTCATGGCTGTCAAAGTCTTCTT
____________________________________________________________
consensus AGAGTCATGGTGAGGAAGAAGAAGCTATGGATTGGTATTCATGGCTGTCAAAGTCTTCTT
. : . : . : . : . : . :
JMSF025N21- CTCTTGACCCTTCACATGTGTACGAGTATGGCCTAGCCTTCACCCGGAATGAGCTCAAGG
JMSF033C18- CTCTTGACCCTTCACATGTGTACGAGTATGGCCTAGCCTTCACCCGGAATGAGCTCAAGG
____________________________________________________________
consensus CTCTTGACCCTTCACATGTGTACGAGTATGGCCTAGCCTTCACCCGGAATGAGCTCAAGG
. : . : . : . : . : . :
JMSF025N21- ACGAAGATTTGAGGCACTTTAACCACGAGTTTCTTCAGAGCATGGGCATATCCGTGGCTA
JMSF033C18- ACGAAGATTTGAGGCACTTTAACCACGAGTTTCTTCAGAGCATGGGCATATCCGTGGCTA
____________________________________________________________
consensus ACGAAGATTTGAGGCACTTTAACCACGAGTTTCTTCAGAGCATGGGCATATCCGTGGCTA
. : . : . : . : . : . :
JMSF025N21- AACACCGCCTCGAGATTCTAAAGCTAGCAAGAAATTCTAAGGAGGGAGGCCTTTCGAGAT
JMSF033C18- AACACCGCCTCGAGATTCTAAAGCTAGCAAGAAATTCTAAGGAGGGAGGCCTTTCGAGAT
rJMSF033C18+ GCTAGCAAGAAATTCTAAGGAGGGAGGCCTTTCGAGAT
rJMSF025N21+ AAGGAGGGAGGCCTTTCGAGAT
____________________________________________________________
consensus AACACCGCCTCGAGATTCTAAAGCTAGCAAGAAATTCTAAGGAGGGAGGCCTTTCGAGAT
. : . : . : . : . : . :
JMSF025N21- TCGTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
JMSF033C18- TCGTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
rJMSF033C18+ TCGTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
rJMSF025N21+ TCGTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
rJMSF052E01+ GTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
____________________________________________________________
consensus TCGTGAACACCACCAAGAAGCTTCTTGCCAAGATGGTTCCTCATCATCATCAGAGGAAGG
. : . : . : . : . : . :
JMSF025N21- TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
JMSF033C18- TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
rJMSF033C18+ TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
rJMSF025N21+ TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
rJMSF052E01+ TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
____________________________________________________________
consensus TTAAGATGGTGAGCCGTTATCAGGAACGGGGCCCGATGCGGCCCTGTAAACCGCGGTTGC
. : . : . : . : . : . :
JMSF025N21- TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
JMSF033C18- TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
rJMSF033C18+ TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
rJMSF025N21+ TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
rJMSF052E01+ TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
____________________________________________________________
consensus TGAAGTCAGGGCCGCTTGATAGGAAGGTTCCGGTTTCGGTTCAGGAGAAAATGGCAATCA
. : . : . : . : . : . :
JMSF025N21- CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
JMSF033C18- CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
rJMSF033C18+ CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
rJMSF025N21+ CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
rJMSF052E01+ CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
____________________________________________________________
consensus CTCCAAGTAGCCTATCAGGGCCCTTGGATGCCAAGGTTCAAGAGAGATTGATGCTCCCAA
. : . : . : . : . : . :
JMSF025N21- GCTGTAGCCCTATGGGTTG
JMSF033C18- GCTGTAGCCCTATGGGTTGGGGTGGAGA
rJMSF033C18+ GCTGTAGCCCTATGGGTTGGGGTGGAGAGGTGAGGAAGGAGAGGAGGATGGTGTTTCCCA
rJMSF025N21+ GCTGTAGCCCTATGGGTTGGGGTGGAGAGGTGAGGAAGGAGAGGAGGATGGGGTTTCCCA
rJMSF052E01+ GCTGTAGCCCTATGGGTTGGGGTGGAGAGGTGAGGAAGGAGAGGAGGATGGTGTTTCCCA
____________________________________________________________
consensus GCTGTAGCCCTATGGGTTGGGGTGGAGAGGTGAGGAAGGAGAGGAGGATGGTGTTTCCCA
. : . : . : . : . : . :
rJMSF033C18+ CCATAAGCCCTAGTAGATCAGGGCCGTTGGATGCCACCAGCTGGACTTTGATGAGCATGA
rJMSF025N21+ CCATAAGCCCTAGTAGATCAGGGCCGTTGGATGCCACCAGCTGGACTTTGATGAGCATGA
rJMSF052E01+ CCATAAGCCCTAGTAGATCAGGGCCGTTGGATGCCACCAGCTGGACTTTGATGAGCATGA
____________________________________________________________
consensus CCATAAGCCCTAGTAGATCAGGGCCGTTGGATGCCACCAGCTGGACTTTGATGAGCATGA
. : . : . : . : . : . :
rJMSF033C18+ GCCCAAGCACTAATCAGAACAACGACGCTCATTCACTATGGTCCTTAATGTTTCAAGACA
rJMSF025N21+ GCCCAAGCACTAATCAGAACAACGACGCTCATTCACTATGGTCCTTAATGTTTCAAGACA
rJMSF052E01+ GCCCAAGCACTAATCAGAACAACGACGCTCATTCACTATGGTCCTTAATGTTTCAAGACA
____________________________________________________________
consensus GCCCAAGCACTAATCAGAACAACGACGCTCATTCACTATGGTCCTTAATGTTTCAAGACA
. : . : . : . : . : . :
rJMSF033C18+ TGAAGCCAACTTAATTGAAAAGATATATATTTCATGGCCTTCTTCATGCATGTTTGCAAA
rJMSF025N21+ TGAAGCCAACTTAATTGAAAAGATATATATTTCATGGCCTTCTTCATGCATGTTTGCAAA
rJMSF052E01+ TGAAGCCAACTTAATTGAAAAGATATATATTTCATGGCCTTCTTCATGCATGTTTGCAAA
____________________________________________________________
consensus TGAAGCCAACTTAATTGAAAAGATATATATTTCATGGCCTTCTTCATGCATGTTTGCAAA
. : . : . : . : . : . :
rJMSF033C18+ GGTTCAATTCCCTATATATACTAGCTTTTATATATATTACTTTTATTATGGCTGGAGTTT
rJMSF025N21+ GGTTCAATTCCCTATATATACTAGCTTTTATATATATTACTTTTATTATGGCTGGAGTTT
rJMSF052E01+ GGTTCAATTCCCTATATATACTAGCTTTTATATATATTACTTTTATTATGGCTGGAGTTT
____________________________________________________________
consensus GGTTCAATTCCCTATATATACTAGCTTTTATATATATTACTTTTATTATGGCTGGAGTTT
. : . : . : . : . : . :
rJMSF033C18+ TTCTGTTTTGTGTTGAGATGGAACACATGCTTCAATTTGATATTAGAGCCAAAGATCGAT
rJMSF025N21+ TTCTGTTTTGTGTTGAGATGGAACACATGCTTCAATTTGATATTAGAGCCAAAGATCGAT
rJMSF052E01+ TTCTGTTTTGTGTTGAGATGGAACACATGCTTCAATTTGATATTAGAGCCAAAGATCGAT
____________________________________________________________
consensus TTCTGTTTTGTGTTGAGATGGAACACATGCTTCAATTTGATATTAGAGCCAAAGATCGAT
. : . : . : . : . : . :
rJMSF033C18+ TATGGTCTACGTGTTGCCTGGAGCCTGTCAAAAGTAATCGGTCCACACACGTGAGAGGGC
rJMSF025N21+ TATGGTCTACGTGTTGCCTGGAGCCTGTCAAAAGTAATCGGTCCACACACGTGAGAGGGC
rJMSF052E01+ TATGGTCTACGTGTTGCCTGGAGCCTGTCAAAAGTAATCGGTCCACACACGTGAGAGGGC
____________________________________________________________
consensus TATGGTCTACGTGTTGCCTGGAGCCTGTCAAAAGTAATCGGTCCACACACGTGAGAGGGC
. : . : . : . : . : . :
rJMSF033C18+ GTGTTGAGCATGGAGCACATGCT
rJMSF025N21+ GTGTTGAGCATGGAGCACATGCTTCAATTTTTTCAACTTTATAAACAAAAAATTTGAGTA
rJMSF052E01+ GTGTTGAGCATGGAGCACATGCTTCAATTTTTTCAACTTTATAAACAAAAAATTTGAGTA
____________________________________________________________
consensus GTGTTGAGCATGGAGCACATGCTTCAATTTTTTCAACTTTATAAACAAAAAATTTGAGTA
. : . : . : . : . : . :
rJMSF025N21+ TATATTTGGTGCATATATGCATGTATGCT
rJMSF052E01+ TATATTTGGTGCATATATGCATGTATGCTTTATGCCTTTACTTTCAAAATATTATATATT
____________________________________________________________
consensus TATATTTGGTGCATATATGCATGTATGCTTTATGCCTTTACTTTCAAAATATTATATATT
. : . : . : . : . : . :
rJMSF052E01+ ATATTTGTAAATTCAGTTCTCTCTCTCATTGTGTTCACTTTCACTGGGTCATGTTCTAAT
____________________________________________________________
consensus ATATTTGTAAATTCAGTTCTCTCTCTCATTGTGTTCACTTTCACTGGGTCATGTTCTAAT
. : . : . : . : . : . :
rJMSF052E01+ TAAGCTAGGATATGATGCTGCTTCAAGAACACCATATTTAATTTCTTTGAAATTCGTAAT
____________________________________________________________
consensus TAAGCTAGGATATGATGCTGCTTCAAGAACACCATATTTAATTTCTTTGAAATTCGTAAT