| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027O18 | Sequence | 527 | 007400 (4) | ref|XP_009796996.1| | 2e-32 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC | 708 | 001502 (4) | ref|XP_009781390.1| | 5e-26 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] |
| JMSF016G18 | Sequence | 489 | 007400 (4) | ref|XP_009796996.1| | 8e-38 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC | 770 | 001502 (4) | emb|CDP11965.1| | 5e-23 | unnamed protein product [Coffea canephora] |
| JMSF043D13 | Sequence | 732 | 007400 (4) | emb|CDP11965.1| | 9e-98 | unnamed protein product [Coffea canephora] | 783 | 001502 (4) | emb|CDP11965.1| | 2e-29 | unnamed protein product [Coffea canephora] |
| JMSF051E18 | Sequence | 692 | 007400 (4) | emb|CDP11965.1| | 5e-86 | unnamed protein product [Coffea canephora] | 741 | 001502 (4) | ref|XP_011102017.1| | 6e-11 | PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3 [S |
This contig is upended
. : . : . : . : . : . :
rJMSF043D13+ GGATGAAGAGTCAGAA
____________________________________________________________
consensus GGATGAAGAGTCAGAA
. : . : . : . : . : . :
rJMFF027O18+ CTGGGACA
rJMSF043D13+ GATGATTTTGTTCNATTATCCCGCAGATCTACCAAGAGATACATCCCAAGGACTGGGACA
____________________________________________________________
consensus GATGATTTTGTTCNATTATCCCGCAGATCTACCAAGAGATACATCCCAAGGACTGGGACA
. : . : . : . : . : . :
rJMFF027O18+ GGGACGTAAGCCCCTTGGCTTGAAAAGTGAGCCAGTGCGGATCAATCCAATTCTTCCTCC
rJMSF043D13+ GGGACGTAAGCCCCTTGGCTTGAAAAGTGAGCCAGTGCGGATCAATCCAATTCTTCCTCC
____________________________________________________________
consensus GGGACGTAAGCCCCTTGGCTTGAAAAGTGAGCCAGTGCGGATCAATCCAATTCTTCCTCC
. : . : . : . : . : . :
rJMFF027O18+ ACCACCCTCATCGAGGAATCCAGTTTCTACTGATGCTGGAATGATTGACTATTTAAGTGG
rJMSF043D13+ ACCACCCTCATCGAGGAATCCAGTTTCTACTGATGCTGGAATGATTGACTATTTAAGTGG
rJMSF016G18+ CTGATGCTGGAATGATTGNCTATNTAAGTGG
____________________________________________________________
consensus ACCACCCTCATCGAGGAATCCAGTTTCTACTGATGCTGGAATGATTGACTATTTAAGTGG
. : . : . : . : . : . :
rJMFF027O18+ TGAAACATATCAGTCCGAAAGATCGTCTGGACCTTCAGGATCTGCACCAACTGCTGTTTC
rJMSF043D13+ TGAAACATATCAGTCCGAAAGATCGTCTGGACCTTCAGGATCTGCACCAACTGCTGTTTC
rJMSF016G18+ TGAANCATATCAGTCNGAAAGATCGTCTGGACCTTCAGGATCTGCACCAACTGCTGTTTC
rJMSF051E18+ ATCTGCACCAACTGCTGTTTC
____________________________________________________________
consensus TGAAACATATCAGTCCGAAAGATCGTCTGGACCTTCAGGATCTGCACCAACTGCTGTTTC
. : . : . : . : . : . :
rJMFF027O18+ TACACATTCAAATGATTCAATCCCTGTCAAATCAAATCCTCCAAAGCTCTCTTCTTCTCC
rJMSF043D13+ TACACATTCAAATGATTCAATCCCTGTCAAATCAAATCCTCCAAAGCTCTCTTCTTCTCC
rJMSF016G18+ TACACATTCAAATGATTCAATCCCTGTCAAATCAAATCCTCCAAAGCTCTCTTCTTCTCC
rJMSF051E18+ TACACATTCAAATGATTCAATCCCTGTCAAATCAAATCCTCCAAAGCTCTCTTCTTCTCC
____________________________________________________________
consensus TACACATTCAAATGATTCAATCCCTGTCAAATCAAATCCTCCAAAGCTCTCTTCTTCTCC
. : . : . : . : . : . :
rJMFF027O18+ TCCAGATGATCTCATAAATCCAACGGCAGCCGATGATGATTTCCTTAACCCCACGGCATC
rJMSF043D13+ TCCAGATGATCTCATAAATCCAACGGCAGCCGATGATGATTTCCTTAACCCCACGGCATC
rJMSF016G18+ TCCAGATGATCTCATAAATCCAACGGCAGCCGANGATGATTTCCTTAACCCCACGGCATC
rJMSF051E18+ TCCAGATGATCTCATAAATCCAACGGCAGCCGATGATGATTTCCTTAACCCCACGGCATC
____________________________________________________________
consensus TCCAGATGATCTCATAAATCCAACGGCAGCCGATGATGATTTCCTTAACCCCACGGCATC
. : . : . : . : . : . :
rJMFF027O18+ TATGTTTGCTTCAAAGCCCAAATCTGCCGATCATTTACCTCAAGCTCCTTGGGATGCTAC
rJMSF043D13+ TATGTTTGCTTCAAAGCCCAAATCTGCCGATCATTTACCTCAAGCTCCTTGGGATGCTAC
rJMSF016G18+ TATGTTTGCTTCAAAGCCCAAATCTGCCGATCATTTACCTCAAGCTCCTTGGGATGCTAC
rJMSF051E18+ TATGTTTGCTTCAAAGCCCAAATCTGCCGATCATTTACCTCAAGCTCCTTGGGATGCTAC
____________________________________________________________
consensus TATGTTTGCTTCAAAGCCCAAATCTGCCGATCATTTACCTCAAGCTCCTTGGGATGCTAC
. : . : . : . : . : . :
rJMFF027O18+ CCCTGCGGGCGCCCTCCCACCACCACCTGCCAAATTTAACCAGAGACAACAATATTTTGA
rJMSF043D13+ CCCTGCGGGCGCCCTCCCACCACCACCTGCCAAATTTAACCAGAGACAACAATATTTTGA
rJMSF016G18+ CCCTGCGGGCGCCCTCCCACCACCNCNTGCCAAATTTAACCAGAGACAACAATATTTTGA
rJMSF051E18+ CCCTGCGGGCGCCCTCCCACCACCACCTGCCAAATTTAACCAGAGACAACAATATTTTGA
____________________________________________________________
consensus CCCTGCGGGCGCCCTCCCACCACCACCTGCCAAATTTAACCAGAGACAACAATATTTTGA
. : . : . : . : . : . :
rJMFF027O18+ GCAACAGCATCAATTTCCTGGCAGCCCCTCAAATTCCAGTGCGGGGTCTTACAACAGCTT
rJMSF043D13+ GCAACAGCATCAATTTCCTGGCAGCCCCTCAAATTCCAGTGCGGGGTCTTACAACAGCTT
rJMSF016G18+ GCAACAGCATCAATTTCCTGGCAGCCCCTCAAATTCCAGTGCGGGGTNTTACANCAGNTT
rJMSF051E18+ GCAACAGCATCAATTTCCTGGCAGCCCCTCAAATTCCAGTGCGGGGTCTTACAACAGCTT
____________________________________________________________
consensus GCAACAGCATCAATTTCCTGGCAGCCCCTCAAATTCCAGTGCGGGGTCTTACAACAGCTT
. : . : . : . : . : . :
rJMFF027O18+ AGTGGGGCAGACAAAGAATCTGTCGATTAATCCACCAACCCCAACCAAACAAGAAAAAGC
rJMSF043D13+ AGTGGGGCAGACAAAGAATCTGTCGATTAATCCACCAACCCCAACCAAACAAGAAAAAGC
rJMSF016G18+ AGTGGGGCAGACAAAGAATCTGTCGATTAATCCACCAACCCCANCCAAACAAGAAAAAGC
rJMSF051E18+ AGTGGGGCAGACAAAGAATCTGTCGATTAATCCACCAACCCCAACCAAACAAGAAAAAGC
____________________________________________________________
consensus AGTGGGGCAGACAAAGAATCTGTCGATTAATCCACCAACCCCAACCAAACAAGAAAAAGC
. : . : . : . : . : . :
rJMFF027O18+ AGAGGATGCGCTCTTCAAAGATCTGGTTGATTTTGCCAAAGCTAAGTCTTCATCATCATC
rJMSF043D13+ AGAGGATGCGCTCTTCAAAGATCTGGTTGATTTTGCCAAAGCTAAGTCTTCATCATCATC
rJMSF016G18+ AGAGGATGCGCTCTTCAAAGATCTGGTTGATTTTGCCAAAGCTAAGTCTTCATCATCATC
rJMSF051E18+ AGAGGATGCGCTCTTCAAAGATCTGGTTGATTTTGCCAAAGCTAAGTCTTCATCATCATC
____________________________________________________________
consensus AGAGGATGCGCTCTTCAAAGATCTGGTTGATTTTGCCAAAGCTAAGTCTTCATCATCATC
. : . : . : . : . : . :
rJMFF027O18+ GTCGTCAAAGCCTTCTAGTAATAGATCTCTTTGAGAAACTGTATTAATCATTGGTGTGGT
rJMSF043D13+ GTCGTCAAAGCCTTCTAGTAATAGATCTCTTTGAGAAACTGTATTAATCATTGGTGTGGT
rJMSF016G18+ GTCGTCAAAGCCTTCTAGTAATAGATCTCTNTGAGAAACTGTATTAATCANTGGTGTGGT
rJMSF051E18+ GTCGTCAAAGCCTTCTAGTAATAGATCTCTTTGAGAAACTGTATTAATCATTGGTGTGGT
____________________________________________________________
consensus GTCGTCAAAGCCTTCTAGTAATAGATCTCTTTGAGAAACTGTATTAATCATTGGTGTGGT
. : . : . : . : . : . :
rJMFF027O18+ ACAGTTTCCAGTGTTGTTAGTTCTGATCAATATT
rJMSF043D13+ ACAGTTTCCAGTGTTGTTAGTTCTGATCAATATT
rJMSF016G18+ ACAGTTTCCAGTGTTGTTAGTTCTGATCAATATTTCAGACTAATAATTNCAGATTGGAAC
rJMSF051E18+ ACAGTTTCCAGTGTTGTTAGTTCTGATCAATATTTCAGACTAATAATTACAGATTGGAAC
____________________________________________________________
consensus ACAGTTTCCAGTGTTGTTAGTTCTGATCAATATTTCAGACTAATAATTACAGATTGGAAC
. : . : . : . : . : . :
rJMSF016G18+ TCAGAGCATTGTTACTATATGTTNTGCTGAAACCGCTCGCTGCCTTCATTTACAGACATT
rJMSF051E18+ TCAGAGCATTGTTACTATATGTTTTGCTGAAACCGCTTGCTGCCTTCATTTACAGACATT
____________________________________________________________
consensus TCAGAGCATTGTTACTATATGTTTTGCTGAAACCGCTTGCTGCCTTCATTTACAGACATT
. : . : . : . : . : . :
rJMSF016G18+ GAGTTTGTGAATATCAGTGTTTAGTGTATATCTCTGTGTGTGTGTGTGTACTTGTGGTGC
rJMSF051E18+ GAGTTTGTGAATATCAGTGTTTAGTGTATATCTCTGTGTGTGTGTGTGTACTTGTGGTGC
____________________________________________________________
consensus GAGTTTGTGAATATCAGTGTTTAGTGTATATCTCTGTGTGTGTGTGTGTACTTGTGGTGC
. : . : . : . : . : . :
rJMSF016G18+ AAGAATTTCACAAAGT
rJMSF051E18+ AAGAATTTCACAAAGTTCTTTCACTTGTTTTCATATCAGCATATAGATTGTAAACTGTTT
____________________________________________________________
consensus AAGAATTTCACAAAGTTCTTTCACTTGTTTTCATATCAGCATATAGATTGTAAACTGTTT