Contig 001501:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019I19Sequence613001501 (4)ref|XP_004231883.1|3e-77PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF018L17Sequence513011981 (4)804001501 (4)ref|XP_004231883.1|1e-39PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF025K01Sequence694001501 (4)ref|XP_006339845.1|7e-39PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [
JMSF051B18Sequence681011981 (4)ref|XP_006339845.1|7e-47PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [734001501 (4)ref|XP_004231883.1|2e-38PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan

Alignment

This contig is upended


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JMFN019I19-                                                        TTAACTGGTGACCAT
                      ____________________________________________________________
consensus                                                          TTAACTGGTGACCAT
 
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JMFN019I19-           GAAGCAAGTGCATGGAGAGTTGCAAAGGCTGTGGGCATCAAAGAAGTTCACTGCAGCCTC
                      ____________________________________________________________
consensus             GAAGCAAGTGCATGGAGAGTTGCAAAGGCTGTGGGCATCAAAGAAGTTCACTGCAGCCTC
 
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JMFN019I19-           AAACCGGAAGATAAGCTATATCACGTGACAAGCATTTCCAGAGATAAAGGTGGGCTTATA
                      ____________________________________________________________
consensus             AAACCGGAAGATAAGCTATATCACGTGACAAGCATTTCCAGAGATAAAGGTGGGCTTATA
 
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JMFN019I19-           ATGGTAGGTGATGGCATCAATGATGCCCCTGCCCTTGCTGCTGCCACTGTAGGCATCGTA
rJMSF018L17+                       GCATCAATGATGCCCCTGCCCTTGCTGCTGCCACTGTAGGCATCGTA
rJMSF051B18+                                                       ACTGTAGGCATCGTA
                      ____________________________________________________________
consensus             ATGGTAGGTGATGGCATCAATGATGCCCCTGCCCTTGCTGCTGCCACTGTAGGCATCGTA
 
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JMFN019I19-           CTAGCTGAACGTGCCAGTGCATCTGCTATAGCTGTTGCAGATGTGTTGTTGTTGCAAGAC
rJMSF018L17+          CTAGCTGAACGTGCCAGTGCATCTGCTATAGCTGTTGCAGATGTGTTGTTGTTGCAAGAC
rJMSF025K01+                                    TATAGCTGTTGCAGATGTGTTGTTGTTGCAAGAC
rJMSF051B18+          CTAGCTGAACGTGCCAGTGCATCTGCTATAGCTGTTGCAGATGTGTTGTTGTTGCAAGAC
                      ____________________________________________________________
consensus             CTAGCTGAACGTGCCAGTGCATCTGCTATAGCTGTTGCAGATGTGTTGTTGTTGCAAGAC
 
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JMFN019I19-           AATATTTCAGGCGTTCCATTCTGTGTGGCCAAATCACGGCAAACAACGTCCCTGATTAAG
rJMSF018L17+          AATATTTCAGGCGTTCCATTCTGTGTGGCCAAATCACGGCAAACAACGTCCCTGATTAAG
rJMSF025K01+          AATATTTCAGGCGTTCCANTCTGTGTGGCCAAATCACGGCAAACAACGTCCCTGATTAAG
rJMSF051B18+          AATATTTCAGGCGTTCCATTCTGTGTGGCCAAATCACGGCAAACAACGTCCCTGATTAAG
                      ____________________________________________________________
consensus             AATATTTCAGGCGTTCCATTCTGTGTGGCCAAATCACGGCAAACAACGTCCCTGATTAAG
 
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JMFN019I19-           CAAAATGTGGCCCTTGCATTGTCTAGCATTGCCTTCGCCTCTCTTACATCAGTATTGGGA
rJMSF018L17+          CAAAATGTGGCCCTTGCATTGTCTAGCATTGCCTTCGCCTCTCTTACATCAGTATTGGGA
rJMSF025K01+          CAAAATGTGGCCCNTGCATTGTCTAGCATTGCCTTCGCCTCTCTTACATCAGTATNGGGA
rJMSF051B18+          CAAAATGTGGCCCTTGCATTGTCTAGCATTGCCTTCGCCTCTCTTACATCAGTATTGGGA
                      ____________________________________________________________
consensus             CAAAATGTGGCCCTTGCATTGTCTAGCATTGCCTTCGCCTCTCTTACATCAGTATTGGGA
 
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JMFN019I19-           TTTCTCCCCCTGTGGTTAACGGTGCTTTTACACGAAGGTGGAACACTTGTTGTATGTTTG
rJMSF018L17+          TTTCTCCCCCTGTGGTTAACGGTGCTTTTACACGAAGGTGGAACACTTGTTGTATGTTTG
rJMSF025K01+          TTTCTCCCCCTGTGGTTAACGGTGCTNTTACACGAAGGTGGAACACTTGTTGTATGTTTG
rJMSF051B18+          TTTCTCCCCCTGTGGTTAACGGTGCTTTTACACGAAGGTGGAACACTTGTTGTATGTTTG
                      ____________________________________________________________
consensus             TTTCTCCCCCTGTGGTTAACGGTGCTTTTACACGAAGGTGGAACACTTGTTGTATGTTTG
 
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JMFN019I19-           AATTCCATCCGCGCCCTTAACGACCCTATGTGGTCCTGGAAAGACGATATCTCGCAATTG
rJMSF018L17+          AATTCCATCCGCGCCCTTAACGACCCTATGTGGTCCTGGAAAGACGATATCTCGCAATTG
rJMSF025K01+          AATTCCATCCGCGCCCTTAACGACCCTATGTGGTCCTGGAAAGACGATATCTCGCAATTG
rJMSF051B18+          AATTCCATCCGCGCCCTTAACGACCCTATGTGGTCCTGGAAAGACGATATCTCGCAATTG
                      ____________________________________________________________
consensus             AATTCCATCCGCGCCCTTAACGACCCTATGTGGTCCTGGAAAGACGATATCTCGCAATTG
 
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JMFN019I19-           ATTAACAGATTGAGACATGTAATTATGGTATTCAGAAGGCATGAGATCATCCAAGGTACC
rJMSF018L17+          ATTAACAGATTGAGACATGTAATTATGGTATTCAGAAGGCATGAGATCATCCAAGGTACC
rJMSF025K01+          NTTAACAGATTGAGACATGTAATTATGGTATTCAGAAGGCATGAGATCATCCAAGGTACC
rJMSF051B18+          ATTAACAGATTGAGACATGTAATTATGGTATTCAGAAGGCATGAGATCATCCAAGGTACC
                      ____________________________________________________________
consensus             ATTAACAGATTGAGACATGTAATTATGGTATTCAGAAGGCATGAGATCATCCAAGGTACC
 
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JMFN019I19-           ATTCAAACTACTCCGAGATTTCCATCTCGTTGATCAACAACTCACAGATGCTCAGGAT  
rJMSF018L17+          ATTCAAACTACTCCGTGATTTCCATCTCGTTGATCAACAACTCACAGATGCTCAGGATAA
rJMSF025K01+          ATTCAAACTACTCCGTGATTTCCATCTCGTTGATCAACAACTCACAGATGCTCAGGATAA
rJMSF051B18+          ATTCAAACTACTCCGTGATTTCCATCTCGTTGATCAACAACTCACAGATGCTCAGGATAA
                      ____________________________________________________________
consensus             ATTCAAACTACTCCGTGATTTCCATCTCGTTGATCAACAACTCACAGATGCTCAGGATAA
 
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rJMSF018L17+          GTGTATGAAATATGAAGAGTTAAAGCTCTTGGGTATATGCTGAATTAACTGGTTAGTAGC
rJMSF025K01+          GNGTATGAAATATGAAGAGTTAAAGCTCTTGGGTATATGCTGAATTAACTGGTTAGTAGC
rJMSF051B18+          GTGTATGAAATATGAAGAGTTAAAGCTCTTGGGTATATGCTGAATTAACTGGTTAGTAGC
                      ____________________________________________________________
consensus             GTGTATGAAATATGAAGAGTTAAAGCTCTTGGGTATATGCTGAATTAACTGGTTAGTAGC
 
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rJMSF018L17+          CAACTTTGGAGTAGAATTCTCATTCCTATTCCTATTCCTATGAAAGGTAGCCGGTAGGTA
rJMSF025K01+          CAACTTNGGAGTAGAATTCTCATTCCTATTCCTATTCCTATGAAAGGTAGCCGGTAGGTA
rJMSF051B18+          CAACTTTGGAGTAGAATTCTCATTCCTATTCCTATTCCTATGAAAGGTAGCCGGTAGGTA
                      ____________________________________________________________
consensus             CAACTTTGGAGTAGAATTCTCATTCCTATTCCTATTCCTATGAAAGGTAGCCGGTAGGTA
 
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rJMSF018L17+          TTCCACCATCAGAAACAGGAAGGAAACAATGAATGAGTACTGTAAATGAACGGTGATAAG
rJMSF025K01+          TTCCACCATCAGAAACAGGAAGGAAACAANGAATGAGTACTGTAAATGAACGGTGATAAG
rJMSF051B18+          TTCCACCATCAGAAACAGGAAGGAAACAATGAATGAGTACTGTAAATGAACGGTGATAAG
                      ____________________________________________________________
consensus             TTCCACCATCAGAAACAGGAAGGAAACAATGAATGAGTACTGTAAATGAACGGTGATAAG
 
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rJMSF018L17+          TGCATT-TGTTATCATTTATTATTGAGAAAACAATTATTTTAATCTCTTAGTTATTTTAT
rJMSF025K01+          TGCATTCTGTTATCATTTATTATTGAGAAAACAATTATTTTAATCTCTTAGTTATTTTAT
rJMSF051B18+          TGCATT-TGTTATCATTTATTATTGAGAAAACAATTATTTTAATCTCTTAGTTATTTTAT
                      ____________________________________________________________
consensus             TGCATT-TGTTATCATTTATTATTGAGAAAACAATTATTTTAATCTCTTAGTTATTTTAT
 
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rJMSF018L17+          AGTAGTTAAATTAGTCTCT                                         
rJMSF025K01+          AGTAGTTAAATTAGTCTCT                                         
rJMSF051B18+          AGTAGTTAAATTAGTCTCTCAGTTGTAGCTTTAAGCGGTGAATAAATGTAAGATATATAC
                      ____________________________________________________________
consensus             AGTAGTTAAATTAGTCTCTCAGTTGTAGCTTTAAGCGGTGAATAAATGTAAGATATATAC