Contig 001499:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013N04Sequence449001499 (5)
JMSF042F15Sequence493001499 (5)445001499 (5)
JMSF050O24Sequence534001499 (5)485001499 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042F15- ATGGCAACGT
JMSF042F15+ TTTTTTTTTTGAAAGAAAAGAATTTAATATTTATTCAGCCTTCAATCAATGGCAACGT
JMFN013N04+ AAAGAATTTAATATTTATTCAGCCTTCAATCAATGGCAACGT
JMSF050O24+ AAAGAATTTAATATTTATTCAGCCTTCAATCAATGGCAACGT
rJMSF050O24- ACGT
                      ____________________________________________________________
consensus TTTTTTTTTTGAAAGAAAAGAATTTAATATTTATTCAGCCTTCAATCAATGGCAACGT
 
. : . : . : . : . : . :
rJMSF042F15- AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
JMSF042F15+ AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
JMFN013N04+ AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
JMSF050O24+ AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
rJMSF050O24- AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
                      ____________________________________________________________
consensus AACATACAAATCCAACACAGTCGCTCTATGGGCAATATTAATCCCTTTGTAATCTATCTT
 
. : . : . : . : . : . :
rJMSF042F15- ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
JMSF042F15+ ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
JMFN013N04+ ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
JMSF050O24+ ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
rJMSF050O24- ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
                      ____________________________________________________________
consensus ATAGCAGCAAAAAAGCAGAGAAAAGCAGAAGATAATAGATATGAAATGTGGATGGAAGAG
 
. : . : . : . : . : . :
rJMSF042F15- GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGCAGCTGCTGCAGCAGATCCAC
JMSF042F15+ GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGCAGCTGCTGCAGCAGATCCAC
JMFN013N04+ GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGAAGCTGCTGCAGCAGATCCAC
JMSF050O24+ GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGCAGCTGCTGCAGCAGATCCAC
rJMSF050O24- GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGCAGCTGCTGCAGCAGATCCAC
                      ____________________________________________________________
consensus GAGCTGATGATGAGGATTTGGTTTTGGGACGAGCAGCGGCAGCTGCTGCAGCAGATCCAC
 
. : . : . : . : . : . :
rJMSF042F15- CGGCCGACGAGACTGGGATGGTGCGCGCCCTCCTCTTCATCATCTGCAAGCTTAGCTTCT
JMSF042F15+ CGGCCGACGAGACTGGGATGGTGCGCGCCCTCCTCTTCATCATCTGCAAGCTTAGCTTCT
JMFN013N04+ CGGCCGACGAGTCTGGGATGGTGCGCGCCCTCCTCTTCATCACCTGCAAGCTTAGCTTCT
JMSF050O24+ CGGCCGACGAGACTGGGATGGTGCGCGCCCTCCTCTTCATCACCTGCAAGCTTAGCTTCT
rJMSF050O24- CGGCCGACGAGACTGGGATGGTGCGCGCCCTCCTCTTCATCACCTGCAAGCTTAGCTTCT
                      ____________________________________________________________
consensus CGGCCGACGAGACTGGGATGGTGCGCGCCCTCCTCTTCATCACCTGCAAGCTTAGCTTCT
 
. : . : . : . : . : . :
rJMSF042F15- CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
JMSF042F15+ CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
JMFN013N04+ CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
JMSF050O24+ CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
rJMSF050O24- CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
                      ____________________________________________________________
consensus CGGCTACTGGAGAAGATAATATGAATGGTTTGGTTTGAAGAGCAGAAGGCGAAAGGGGTG
 
. : . : . : . : . : . :
rJMSF042F15- ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
JMSF042F15+ ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
JMFN013N04+ ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
JMSF050O24+ ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
rJMSF050O24- ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
                      ____________________________________________________________
consensus ATGATGATGAATATGAAACCAAAAAGGATAGAGAGAGTAAGAGGAGAGCTATGAAAGCAG
 
. : . : . : . : . : . :
rJMSF042F15- CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCCAGGGTAGGAAGCTAAGGAA
JMSF042F15+ CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCCAGGGTAGGAAGCTAAGGAA
JMFN013N04+ CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCC
JMSF050O24+ CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCCAGGGTAGGAAGCTAAGGAA
rJMSF050O24- CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCCAGGGTAGGAAGCTAAGGAA
                      ____________________________________________________________
consensus CAGCTATTGCCTTCACTTCAATCATGGCGGCTTAGCTTCCCAGGGTAGGAAGCTAAGGAA
 
. : . : . : . : . : . :
rJMSF042F15- GAATATAATGAAGC
JMSF042F15+ GAATATAATGAAGC
JMSF050O24+ GAATATAATGAAGCGTGATAGGCAGGCCAAGACGCAATATATGTATATATAATAATAGTC
rJMSF050O24- GAATATAATGAAGCGTGATAGGCAGGCCAAGACGCAATATATGTATATATAATAATAGTC
                      ____________________________________________________________
consensus GAATATAATGAAGCGTGATAGGCAGGCCAAGACGCAATATATGTATATATAATAATAGTC