Contig 001496:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF050F01Sequence662021195ref|XP_009629262.1|4e-14PREDICTED: transcription factor bHLH112-like [Nicotiana tomentosiformis]715001496 (2)emb|CDO99682.1|5e-39unnamed protein product [Coffea canephora]
JMSF050G15Sequence697001496 (2)gb|KJB57683.1|3e-49hypothetical protein B456_009G175300 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF050G15+                                   CAAAGAGAAGCTGGGGGACCGAATAACTGCCCTCC
                      ____________________________________________________________
consensus                                      CAAAGAGAAGCTGGGGGACCGAATAACTGCCCTCC
 
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rJMSF050G15+          AACAATTGGTGTCACCTTTTGGAAAGACTGATACTGCCTCAGTTCTCCATGAAGCTANTG
rJMSF050F01+                           TTTGGAAAGACTGATACTGCCTCAGTTCTCCATGAAGCTATTG
                      ____________________________________________________________
consensus             AACAATTGGTGTCACCTTTTGGAAAGACTGATACTGCCTCAGTTCTCCATGAAGCTATTG
 
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rJMSF050G15+          AGTACATCAAGTTCCTCCATGATCAAGTCAATGTTNTGATTACTCCCTATATGAAAAACG
rJMSF050F01+          AGTACATCAAGTTCCTCCATGATCAAGTCAATGTTTTGATTACTCCCTATATGAAAAACG
                      ____________________________________________________________
consensus             AGTACATCAAGTTCCTCCATGATCAAGTCAATGTTTTGATTACTCCCTATATGAAAAACG
 
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rJMSF050G15+          GGTCGCCATCCGATCAGCACTCTCAACAGAATACTGAGGAGGTTTTGGNTGAAGAAGGGT
rJMSF050F01+          GGTCGCCATCCGATCAGCACTCTCAACAGAATACTGAGGAGGTTTTGGATGAAGAAGGGT
                      ____________________________________________________________
consensus             GGTCGCCATCCGATCAGCACTCTCAACAGAATACTGAGGAGGTTTTGGATGAAGAAGGGT
 
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rJMSF050G15+          TGTCAAAACAAGATTTAAGGAGCCAAGGGCTATGTCTAGTGCCAATGTCAAGCACATTCC
rJMSF050F01+          TGTCAAAACAAGATTTAAGGAGCCAAGGGCTATGTCTAGTGCCAATGTCAAGCACATTCC
                      ____________________________________________________________
consensus             TGTCAAAACAAGATTTAAGGAGCCAAGGGCTATGTCTAGTGCCAATGTCAAGCACATTCC
 
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rJMSF050G15+          CTGTGGCTGCTGAGACAACAACTGATTTCTGGACACCAACGTTTGGGGCAAATTTCAGGT
rJMSF050F01+          CTGTGGCTGCTGAGACAACAACTGATTTCTGGACACCAACGTTTGGGGCAAATTTCAGGT
                      ____________________________________________________________
consensus             CTGTGGCTGCTGAGACAACAACTGATTTCTGGACACCAACGTTTGGGGCAAATTTCAGGT
 
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rJMSF050G15+          AGAAACTACTGTATAGGGAAGAGATTGAATTATTGTTCGGAGAAGTTAAAAGAAGTGAGT
rJMSF050F01+          AGAAACTACTGTATAGGGAAGAGATTGAATTATTGTTCGGAGAAGTTAAAAGAAGTGAGT
                      ____________________________________________________________
consensus             AGAAACTACTGTATAGGGAAGAGATTGAATTATTGTTCGGAGAAGTTAAAAGAAGTGAGT
 
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rJMSF050G15+          TTTGGTGATTTCTTTAGACCTTTGGGTTTCTTAAGGAAAAAAAGGGAAGACAGGATAGCA
rJMSF050F01+          TTTGGTGATTTCTTTAGACCTTTGGGTTTCTTAAGGAAAAAAAGGGAAGACAGGATAGCA
                      ____________________________________________________________
consensus             TTTGGTGATTTCTTTAGACCTTTGGGTTTCTTAAGGAAAAAAAGGGAAGACAGGATAGCA
 
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rJMSF050G15+          ATGCTGGNCCATGAAGAGGCAGAAGGGCANTATGTTTTCACAAACCAAATGATGATTAAG
rJMSF050F01+          ATGCTGGGCCATGAAGAGGCAGAAGGGCATTATGTTTTCACAAACCAAATGATGATTAAG
                      ____________________________________________________________
consensus             ATGCTGGGCCATGAAGAGGCAGAAGGGCATTATGTTTTCACAAACCAAATGATGATTAAG
 
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rJMSF050G15+          GTTGAATTAAAGGANAACGTTGTNATNATAATGAATAATTAAGAATAATATGGAGGTTAG
rJMSF050F01+          GTTGAATTAAAGGATAACGTTGTAATAATAATGAATAATTAAGAATAATATGGAGGTTAG
                      ____________________________________________________________
consensus             GTTGAATTAAAGGATAACGTTGTAATAATAATGAATAATTAAGAATAATATGGAGGTTAG
 
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rJMSF050G15+          GAACAGNTGCAAATTTAGNTGATGATGATNATGAGGGNTTAGCTAGGTTATTAATATAAT
rJMSF050F01+          GAACAGGTGCAAATTTAGTTGATGATGATTATGAGGGTTTAGCTAGGTTATTAATATAAT
                      ____________________________________________________________
consensus             GAACAGGTGCAAATTTAGTTGATGATGATTATGAGGGTTTAGCTAGGTTATTAATATAAT
 
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rJMSF050G15+          AACTTAATTATATTAATTANCCAATCTTATTNTTNTATGTAGTGCATGTATGTGTNGTGT
rJMSF050F01+          AACTTAATTATATTAATTAACCAATGTTATTATTGTATGTAGTGCATGTATGTGTTGTGT
                      ____________________________________________________________
consensus             AACTTAATTATATTAATTAACCAATGTTATTATTGTATGTAGTGCATGTATGTGTTGTGT
 
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rJMSF050G15+          TG                                                          
rJMSF050F01+          TGTTGTTGGTTGAGCTCAAAGTTAGCAGATCAGATTACTTATTACAAAGCAACTTTGTCA
                      ____________________________________________________________
consensus             TGTTGTTGGTTGAGCTCAAAGTTAGCAGATCAGATTACTTATTACAAAGCAACTTTGTCA