Contig 001494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015A14Sequence441006544 (3)ref|XP_009592048.1|3e-19PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi773001494 (3)ref|XP_011080768.1|137PREDICTED: putative tRNA pseudouridine synthase [Sesamum indicum]
JMSF025L02Sequence657006544 (3)ref|XP_009592048.1|1e-79PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi751001494 (3)ref|XP_006348028.1|2e-80PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero
JMSF050A15Sequence657006544 (3)ref|XP_009592048.1|1e-83PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi704001494 (3)ref|XP_006348028.1|2e-37PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+                                                        TGCCAATCCGTGCA
                      ____________________________________________________________
consensus                                                           TGCCAATCCGTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          AGATGGCTATATGAAACTGACGCCAGGGATAAACTCAGTTCTTCTCATTTCCGAAAGATA
rJMSF025L02+                                                              GAAAGATA
                      ____________________________________________________________
consensus             AGATGGCTATATGAAACTGACGCCAGGGATAAACTCAGTTCTTCTCATTTCCGAAAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
rJMSF025L02+          TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
                      ____________________________________________________________
consensus             TTACATTGTAATTGTGGGAACTTGGAGCAGTTACATGGTATGAATTATGTGGAAATCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          GTCTGTGGAGAATCATTCATGTTACATCAAANTTNCTNNNNNGGTAGGAACAGCGATTGC
rJMSF025L02+          GTCTGTGGAGAATCATTCATGTTACATCAAATACGC-AAAATGGTAGGAACAGCGATTGC
                      ____________________________________________________________
consensus             GTCTGTGGAGAATCATTCATGTTACATCAAATTTGCTAAAATGGTAGGAACAGCGATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
rJMSF025L02+          AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
                      ____________________________________________________________
consensus             AATAAAGCGCAACTTGCTACCCCTGGATGTTTTAAAATTGTCTCTTAACAAGTTTTCACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
rJMSF025L02+          GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
rJMSF050A15+                         TGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
                      ____________________________________________________________
consensus             GATTGTCCTGCCCCTTGCCCCATCAGAAGTTTTGATTTTGAAGGCCAACAGCTTTGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
rJMSF025L02+          AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
rJMSF050A15+          AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
                      ____________________________________________________________
consensus             AAGAACACTACCTGGCAACATAGCAAGACCAGAAGTGTTGAGACTGTTAGAATCCGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
rJMSF025L02+          CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
rJMSF050A15+          CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
                      ____________________________________________________________
consensus             CATTCTTGAGGCTGTGGATCAGTTCTACAGTTCCACAATGTTACCTCAATTATCTAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          TTTGGATCCTTTA--GTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
rJMSF025L02+          TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
rJMSF050A15+          TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
                      ____________________________________________________________
consensus             TTTGGATCCTTTAGCGTCTCCATGGAGGGAGTGGGTAGCACTTCTGGACGCAAACACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
rJMSF025L02+          TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
rJMSF050A15+          TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
                      ____________________________________________________________
consensus             TATACCAGAATGCCAATTGGAAGAAGTTAGGACTGGATGGACTGGATGGAAACTACAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
rJMSF025L02+          GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
rJMSF050A15+          GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
                      ____________________________________________________________
consensus             GAAAAGCAAAAAGAAGCCTTTGTCAACATTGAATTGAGACAGCAAATGTATGACTCGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
rJMSF025L02+          CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
rJMSF050A15+          CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
                      ____________________________________________________________
consensus             CAATTCTTGGTGGGAATGAAAAGCTTCTTGATAAGCTCTACTCTGCTATCAGCCAAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
rJMSF025L02+          CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
rJMSF050A15+          CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
                      ____________________________________________________________
consensus             CAACTAGCAAAGCCAATGACTTGATATGAAACCAGAAAAATGAGAACACATTCCCCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015A14+          TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAA                   
rJMSF025L02+          TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGACCATGATT
rJMSF050A15+          TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGA-CATGATT
                      ____________________________________________________________
consensus             TTCATACTACTATGTTGTTGTTAGCCATTACTAATGAGTAATGAGACACTGACCATGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L02+          TTGTATTATATACGTATGTAGTAT                                    
rJMSF050A15+          TTGTATTATATACGTATGTAGTATCGTCCCATCCCGGCCATAATGCTTGCCAGATTATTA
                      ____________________________________________________________
consensus             TTGTATTATATACGTATGTAGTATCGTCCCATCCCGGCCATAATGCTTGCCAGATTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A15+          CACAACACGTACATACAGACAACAACTCAACAAGCAATCTATTCCTCATCATTTCTTAGG
                      ____________________________________________________________
consensus             CACAACACGTACATACAGACAACAACTCAACAAGCAATCTATTCCTCATCATTTCTTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A15+          CCTAGGAACTAGGAATTTATGGTTTGACAATGATGTTTGAAATTCTTGAGGGCATGAATA
                      ____________________________________________________________
consensus             CCTAGGAACTAGGAATTTATGGTTTGACAATGATGTTTGAAATTCTTGAGGGCATGAATA