Contig 001489:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001B21Sequence369009567 (2)ref|XP_009759805.1|53.1PREDICTED: uncharacterized protein LOC104212284 [Nicotiana sylvestris]799001489 (2)ref|XP_007020607.1|5e-92Mitochondrial transcription termination factor family protein isoform 1 [Theobr
JMSF049D24Sequence635009567 (2)ref|XP_006344885.1|58.2PREDICTED: uncharacterized protein LOC102594087 [Solanum tuberosum]689001489 (2)ref|XP_009591622.1|211PREDICTED: uncharacterized protein LOC104088618 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF001B21+                             GGGTGCACCTAGAGATAGTATAGTGAAAATGGTTACGAAGC
                      ____________________________________________________________
consensus                                GGGTGCACCTAGAGATAGTATAGTGAAAATGGTTACGAAGC
 
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rJMSF001B21+          ATCCTCAACTTNTTCACTATAGCATTGAGGGTGGATTACTTCCTAGGATTAATTTTCTAC
                      ____________________________________________________________
consensus             ATCCTCAACTTNTTCACTATAGCATTGAGGGTGGATTACTTCCTAGGATTAATTTTCTAC
 
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rJMSF001B21+          GAAGTATTGGGATGCGAGATTCAGACGTATTGAAAGTACTGACTAGCATTACACAGGTGT
rJMSF049D24+                                         GAAAGTACTGACTAGCATTACACAGGTGT
                      ____________________________________________________________
consensus             GAAGTATTGGGATGCGAGATTCAGACGTATTGAAAGTACTGACTAGCATTACACAGGTGT
 
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rJMSF001B21+          TTTCTCTATCGTTGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
rJMSF049D24+          TTTCTCTATCGTNGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
                      ____________________________________________________________
consensus             TTTCTCTATCGTTGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
 
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rJMSF001B21+          AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
rJMSF049D24+          AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
                      ____________________________________________________________
consensus             AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
 
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rJMSF001B21+          GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
rJMSF049D24+          GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
                      ____________________________________________________________
consensus             GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
 
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rJMSF001B21+          CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
rJMSF049D24+          CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
                      ____________________________________________________________
consensus             CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
 
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rJMSF001B21+          TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
rJMSF049D24+          TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
                      ____________________________________________________________
consensus             TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
 
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rJMSF001B21+          AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
rJMSF049D24+          AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
                      ____________________________________________________________
consensus             AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
 
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rJMSF001B21+          TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
rJMSF049D24+          TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
                      ____________________________________________________________
consensus             TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
 
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rJMSF001B21+          AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
rJMSF049D24+          AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
                      ____________________________________________________________
consensus             AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
 
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rJMSF001B21+          ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
rJMSF049D24+          ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
                      ____________________________________________________________
consensus             ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
 
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rJMSF001B21+          GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
rJMSF049D24+          GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
                      ____________________________________________________________
consensus             GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
 
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rJMSF001B21+          TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTT                       
rJMSF049D24+          TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTTTGACTTTCAATATGGTACCATAT
                      ____________________________________________________________
consensus             TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTTTGACTTTCAATATGGTACCATAT