Contig 001489:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001B21Sequence369009567 (2)ref|XP_009759805.1|53.1PREDICTED: uncharacterized protein LOC104212284 [Nicotiana sylvestris]799001489 (2)ref|XP_007020607.1|5e-92Mitochondrial transcription termination factor family protein isoform 1 [Theobr
JMSF049D24Sequence635009567 (2)ref|XP_006344885.1|58.2PREDICTED: uncharacterized protein LOC102594087 [Solanum tuberosum]689001489 (2)ref|XP_009591622.1|211PREDICTED: uncharacterized protein LOC104088618 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001B21+ GGGTGCACCTAGAGATAGTATAGTGAAAATGGTTACGAAGC
                      ____________________________________________________________
consensus GGGTGCACCTAGAGATAGTATAGTGAAAATGGTTACGAAGC
 
. : . : . : . : . : . :
rJMSF001B21+ ATCCTCAACTTNTTCACTATAGCATTGAGGGTGGATTACTTCCTAGGATTAATTTTCTAC
                      ____________________________________________________________
consensus ATCCTCAACTTNTTCACTATAGCATTGAGGGTGGATTACTTCCTAGGATTAATTTTCTAC
 
. : . : . : . : . : . :
rJMSF001B21+ GAAGTATTGGGATGCGAGATTCAGACGTATTGAAAGTACTGACTAGCATTACACAGGTGT
rJMSF049D24+ GAAAGTACTGACTAGCATTACACAGGTGT
                      ____________________________________________________________
consensus GAAGTATTGGGATGCGAGATTCAGACGTATTGAAAGTACTGACTAGCATTACACAGGTGT
 
. : . : . : . : . : . :
rJMSF001B21+ TTTCTCTATCGTTGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
rJMSF049D24+ TTTCTCTATCGTNGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
                      ____________________________________________________________
consensus TTTCTCTATCGTTGGAGGGGAATCTGAAGCCCAAGTACATGTACCTGGTTAATGAACTTA
 
. : . : . : . : . : . :
rJMSF001B21+ AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
rJMSF049D24+ AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
                      ____________________________________________________________
consensus AAAACGAGGTGCACTCCTTGACCAAATATCCAACATACCTAAGCCTGTCCTTGGACCAGA
 
. : . : . : . : . : . :
rJMSF001B21+ GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
rJMSF049D24+ GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
                      ____________________________________________________________
consensus GAATTCGCCCCCGGCATAGGTTTTTGATTTCACTAAAGAAGGCTCCAAAAGGACCTTTTC
 
. : . : . : . : . : . :
rJMSF001B21+ CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
rJMSF049D24+ CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
                      ____________________________________________________________
consensus CTTTGCGTTCACTGGTCCCAACTGATGAATGCTTTTGTCAGCAGTGGGCAGGGACGACCT
 
. : . : . : . : . : . :
rJMSF001B21+ TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
rJMSF049D24+ TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
                      ____________________________________________________________
consensus TAGATACGTATCTCAATTTTCGACAGAGATTACTGTTAAAGGAATTTGCAAAAAAATATG
 
. : . : . : . : . : . :
rJMSF001B21+ AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
rJMSF049D24+ AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
                      ____________________________________________________________
consensus AGAAGCGATGATGGGTTCAAACTCATTCCTAGTGTCTTCCACATGTGAAAAGGGATCTTT
 
. : . : . : . : . : . :
rJMSF001B21+ TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
rJMSF049D24+ TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
                      ____________________________________________________________
consensus TTAATCCTGCTCTCAAGTGCCTAATTCAAAAATCTTTTCTTCACATACCTGGGTCTAGCT
 
. : . : . : . : . : . :
rJMSF001B21+ AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
rJMSF049D24+ AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
                      ____________________________________________________________
consensus AGGCTGTCTTATACAGTTCTTTTGTAGCTAAAGTGGATTTCTGCACATCTCTGGAGATTA
 
. : . : . : . : . : . :
rJMSF001B21+ ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
rJMSF049D24+ ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
                      ____________________________________________________________
consensus ATTAATTCAAACGGAACAAACAGATACCAATACTTTAGAATGTACAGACATATATTGCAA
 
. : . : . : . : . : . :
rJMSF001B21+ GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
rJMSF049D24+ GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
                      ____________________________________________________________
consensus GCCAAAATGGCAAATTTTCAAGTGAATTTCTTATGTTGAGAAGGTCTCATTTTAGGAGTT
 
. : . : . : . : . : . :
rJMSF001B21+ TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTT
rJMSF049D24+ TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTTTGACTTTCAATATGGTACCATAT
                      ____________________________________________________________
consensus TTGTACTTCTTTTTCTTCTACTTTCTGTATGAAATTTTGACTTTCAATATGGTACCATAT