Contig 001486:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049C03Sequence692001486 (3)ref|XP_004228482.1|5e-79PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum] ref|XP_779001486 (3)ref|XP_009794149.1|5e-64PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP
JMSF050C03Sequence763001486 (3)ref|XP_009794149.1|4e-46PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP

Alignment

This contig is upended


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JMSF049C03-                                                              GAAAATATA
                      ____________________________________________________________
consensus                                                                GAAAATATA
 
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JMSF049C03-           TCATCTCCTTTCTCCGAACCCCACTCTCCCTCCCACTTCAACCCCCTTCTCTACGCCCGA
                      ____________________________________________________________
consensus             TCATCTCCTTTCTCCGAACCCCACTCTCCCTCCCACTTCAACCCCCTTCTCTACGCCCGA
 
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JMSF049C03-           TTCTCTCAGGATAACCTCTGGAGCTGGGGTTTAGATTTAAAGTTTGTTTCTTAGTAATTA
                      ____________________________________________________________
consensus             TTCTCTCAGGATAACCTCTGGAGCTGGGGTTTAGATTTAAAGTTTGTTTCTTAGTAATTA
 
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JMSF049C03-           TTGAAGAAGATGTCGAGTGGGAGATATACACACTGGTGCTACCAATGCAGGCAGCCAGTT
                      ____________________________________________________________
consensus             TTGAAGAAGATGTCGAGTGGGAGATATACACACTGGTGCTACCAATGCAGGCAGCCAGTT
 
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JMSF049C03-           AAGCCTCGAGGATCTAATATTCTTTGCCCATACTGCCATGGAGGCTTTGTGCAAGAGCTG
                      ____________________________________________________________
consensus             AAGCCTCGAGGATCTAATATTCTTTGCCCATACTGCCATGGAGGCTTTGTGCAAGAGCTG
 
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JMSF049C03-           AATGAGGTGGTAGGGGGTGGAGAACAACGGGGTCATATTGGATCAAACATTGAGGATGAT
                      ____________________________________________________________
consensus             AATGAGGTGGTAGGGGGTGGAGAACAACGGGGTCATATTGGATCAAACATTGAGGATGAT
 
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JMSF049C03-           CATCACTCTAGGTTTATGGAACCTTTCCCCGACCCAAGATTTGGGATAGTGGATGCCCTT
                      ____________________________________________________________
consensus             CATCACTCTAGGTTTATGGAACCTTTCCCCGACCCAAGATTTGGGATAGTGGATGCCCTT
 
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JMSF049C03-           GAAGCGTTTATGAGGCAGAGAATGGCTGGAAGAAACTCCAGTTATGATATTAGGTCGAGA
                      ____________________________________________________________
consensus             GAAGCGTTTATGAGGCAGAGAATGGCTGGAAGAAACTCCAGTTATGATATTAGGTCGAGA
 
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JMSF049C03-           TCTGGCATGATGCCAGAGAACAATATGTCTTTTGGTTCTGGCCCATGGGTGATATTTCAT
                      ____________________________________________________________
consensus             TCTGGCATGATGCCAGAGAACAATATGTCTTTTGGTTCTGGCCCATGGGTGATATTTCAT
 
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JMSF049C03-           GGCCAATCTCCTGTTCGTATGACACCTGATGATGCTTTTGAGTACTTTTTCAATGGCAGT
                      ____________________________________________________________
consensus             GGCCAATCTCCTGTTCGTATGACACCTGATGATGCTTTTGAGTACTTTTTCAATGGCAGT
 
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JMSF049C03-           TCTAGAATGGGGGGGCAGCGGCGAACTAATTTTGATGATTTCTTTATGGGACCTGGACTG
rJMSF050C03+                  GGGGGGGCAGCGGCGAACTAATTTTGATGATTTCTTTATGGGACCTGGACTG
rJMSF049C03+                  GGGGGGGCAGCGGCGAACTAATTTTGATGATTTCTTTATGGGACCTGGACTG
                      ____________________________________________________________
consensus             TCTAGAATGGGGGGGCAGCGGCGAACTAATTTTGATGATTTCTTTATGGGACCTGGACTG
 
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JMSF049C03-           CAACAATTGATTGAGCAGCTTANTATGAATGGCAGGCAGGGCCCACCACCAGCGCCTCGC
rJMSF050C03+          CAACAANTGATTGAGCAGCTTAGTATGAATGGCAGGCAGGGCCCNCCACCAGCGCCTCGN
rJMSF049C03+          CAACAATTGATTGAGCAGCTTAGTATGAATGGCAGGCAGGGCCCACCACCAGCGCCTCGC
                      ____________________________________________________________
consensus             CAACAATTGATTGAGCAGCTTAGTATGAATGGCAGGCAGGGCCCACCACCAGCGCCTCGC
 
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JMSF049C03-           TCTGCAATTGATGCCATGCCCAC                                     
rJMSF050C03+          TNTGCAATTGATGCCATGCCCACCATCAGGATTACTGAGAGGCATCTCAATACTGATTCA
rJMSF049C03+          TCTGCAATTGATGCCATGCCCACCATCAGGATTACTGAGAGGCATCTCAATACTGATTCA
                      ____________________________________________________________
consensus             TCTGCAATTGATGCCATGCCCACCATCAGGATTACTGAGAGGCATCTCAATACTGATTCA
 
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rJMSF050C03+          CACTGCCCGGTTTGTCAAGATACGTNTGAATTGGGGTCTGAAGCAAGGCAGATGCCATGC
rJMSF049C03+          CACTGCCCGGTTTGTCAAGATACGTTTGAATTGGGGTCTGAAGCAAGGCAGATGCCATGC
                      ____________________________________________________________
consensus             CACTGCCCGGTTTGTCAAGATACGTTTGAATTGGGGTCTGAAGCAAGGCAGATGCCATGC
 
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rJMSF050C03+          AACCACATTTACCATTCTGATNGTATCGTGCCATGGTTGGTCCAGCACANCTCCTGCCCT
rJMSF049C03+          AACCACATTTACCATTCTGATTGTATCGTGCCATGGTTGGTCCAGCACAACTCCTGCCCT
                      ____________________________________________________________
consensus             AACCACATTTACCATTCTGATTGTATCGTGCCATGGTTGGTCCAGCACAACTCCTGCCCT
 
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rJMSF050C03+          GTTTGCCGCCTCGAGCTTCCATCAAATGTTTCTGCGAGAGGGCGTTCCAATTGGACTTCG
rJMSF049C03+          GTTTGCCGCCTCGAGCTTCCATCAAATGTTTCTGCGAGAGGGCGTTCCAATTGGACTTCG
                      ____________________________________________________________
consensus             GTTTGCCGCCTCGAGCTTCCATCAAATGTTTCTGCGAGAGGGCGTTCCAATTGGACTTCG
 
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rJMSF050C03+          AGATCAAGTAACGCCAGCAATGGCAACAACGGTAGCGGTAGCAGCAACAGCAACAGCAGC
rJMSF049C03+          AGATCAAGTAACGCCAGCAATGGCAACAACGGTAGCGGTAGCAGCAACAGCAACAGCAGC
                      ____________________________________________________________
consensus             AGATCAAGTAACGCCAGCAATGGCAACAACGGTAGCGGTAGCAGCAACAGCAACAGCAGC
 
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rJMSF050C03+          ACNGNCAGCAATGGCCAGAACCAGGGAAGAAGAAATCCTTTNTCGTTCCTATGGCCTTTC
rJMSF049C03+          ACCGACAGCAATGGCCAGAACCAGGGAAGAAGAAATCCTTTCTCGTTCCTATGGCCTTTC
                      ____________________________________________________________
consensus             ACCGACAGCAATGGCCAGAACCAGGGAAGAAGAAATCCTTTCTCGTTCCTATGGCCTTTC
 
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rJMSF050C03+          CGCTCATCTAACCAGAACTCTAGTAGCTCTGCAGCAGCATACGAGGACAACAACGGGACA
rJMSF049C03+          CGCTCATCTAACCAGAACTCTAGTAGCTCTGCAGCAGCATACGAGGACAACAACGGGACA
                      ____________________________________________________________
consensus             CGCTCATCTAACCAGAACTCTAGTAGCTCTGCAGCAGCATACGAGGACAACAACGGGACA
 
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rJMSF050C03+          AATTACTATCACTANTGATTTTTNTTCACCGCGTTTCTCATCANGTTACATTGTCTCTGA
rJMSF049C03+          AATTACTATCACTACTGATTTTTCTTCACCGCGTTTCTCATCATGTTACATTGTCTCTGA
                      ____________________________________________________________
consensus             AATTACTATCACTACTGATTTTTCTTCACCGCGTTTCTCATCATGTTACATTGTCTCTGA
 
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rJMSF050C03+          GAGGAGCTCAATCTGGATTCTGGGCCCCCCTTGGACTGGAAGTGAATCTGAAAAAACAAA
rJMSF049C03+          GAGGAGCTCAATCTGGATTCTGGGCCCCCCTTGGACTGGAAGTGAATCTGAAAAAACAAA
                      ____________________________________________________________
consensus             GAGGAGCTCAATCTGGATTCTGGGCCCCCCTTGGACTGGAAGTGAATCTGAAAAAACAAA
 
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rJMSF050C03+          TGATCTTGTGTACTTAAACAGAATGTTCAAAAGTATAGAATATCACAAGTATGCATGTAG
rJMSF049C03+          TGATCTTGTGTACTTAAACAGAATGTTCAAAAGTATAGAATATCACAAGTATGCATGTAG
                      ____________________________________________________________
consensus             TGATCTTGTGTACTTAAACAGAATGTTCAAAAGTATAGAATATCACAAGTATGCATGTAG
 
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rJMSF050C03+          AGGCCATGTAAATGTTTTCAATTATCCTTTCAAGTATNTNCAAAATGTATG         
rJMSF049C03+          AGGCCATGTAAATGTTTTCAATTATCCTTTCAAGTATTTTCAAAATGTATGGACAGGCTG
                      ____________________________________________________________
consensus             AGGCCATGTAAATGTTTTCAATTATCCTTTCAAGTATTTTCAAAATGTATGGACAGGCTG