Contig 001484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012H17Sequence548001979 (9)752001484 (4)
JMSF008C24Sequence392001979 (9)778001484 (4)
JMSF020B11Sequence691001979 (9)ref|XP_006338135.1|1e-20PREDICTED: transport inhibitor response 1-like protein-like, partial [Solanum t798001484 (4)
JMSF048M23Sequence696020110ref|XP_007225690.1|8e-119hypothetical protein PRUPE_ppa003137mg [Prunus persica] gb|EMJ26889.1| hypotheti652001484 (4)

Alignment

This contig is upended


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rJMSF008C24+                                               GGAAGTGATCGATGGAATGCAAT
                      ____________________________________________________________
consensus                                                  GGAAGTGATCGATGGAATGCAAT
 
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rJMSF008C24+          GGGAAGGGATGCAAATGAATATGACATGGTAGCAAATGAATATGACACGGTATACATGTA
rJMSF020B11+              AGGGATGCAAATGAATATGACATGGTAGCAAATGNATATGACACGGTATACATGTA
                      ____________________________________________________________
consensus             GGGAAGGGATGCAAATGAATATGACATGGTAGCAAATGAATATGACACGGTATACATGTA
 
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rJMSF008C24+          CCGGTCTCTTGATGAACCGAGATGCGACGCACCAAAGTTTGTGCAAATCTTTTGATGTTA
rJMSF020B11+          CCGGTCTCTTGATGAACCGAGATGCGACGCACCAAAGTTTGTGCAAATCTTTTGATGTTA
rJMFF012H17+                 CTTGATGAACNGAGATGCGACGCACCAAAGTTTGTGCAAATCTTTTGATGTTA
                      ____________________________________________________________
consensus             CCGGTCTCTTGATGAACCGAGATGCGACGCACCAAAGTTTGTGCAAATCTTTTGATGTTA
 
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rJMSF008C24+          GAAGAGATGAGCAAGGTTTTTTTTCAGTGATTTTAGCAGGCATCAGCAATGATTAGCTTT
rJMSF020B11+          GAAGAGATGAGCAAGGTTTTTTTTCAGTGATTTTAGCAGGCATCAGCAATGATTAGCTTT
rJMFF012H17+          GAAGAGATGAGCAAGGTTTTTTTTCAGTGATTTTAGCAGGCATCAGCAATGATTAGCTTT
                      ____________________________________________________________
consensus             GAAGAGATGAGCAAGGTTTTTTTTCAGTGATTTTAGCAGGCATCAGCAATGATTAGCTTT
 
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rJMSF008C24+          ATTTTTTTTACTTATGTAAGATGTTACTATGCTGATGGCTGTTTGACCCACGAGTAAGGT
rJMSF020B11+          ATTTTTTTTACTTATGTAAGATGTTACTATGCTGATGGCTGTTTGACCCACGAGTAAGGT
rJMFF012H17+          ATTTTTTTTACTTATGTAAGATGTTACTATGCTGATGGCTGTTTGACCCACGAGTAAGGT
rJMSF048M23+                  TACTTATGTAAGATGTTACTATGCTGATGGCTGTTTGACCCACGAGTAAGGT
                      ____________________________________________________________
consensus             ATTTTTTTTACTTATGTAAGATGTTACTATGCTGATGGCTGTTTGACCCACGAGTAAGGT
 
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rJMSF008C24+          CCTGCTCCTGCATGCGTTGTTGTGCAAACGTGGTGCTTATTCAGATAGGGGAAATTGGAC
rJMSF020B11+          CCTGCTCCTGCATGCGTTGTTGTGCAAACGTGGTGCTTATTC--ATAGGGGAAATTGGAC
rJMFF012H17+          CCTGCTCCTGCATGCGTTGTTGTGCAAACGTGGTGCTTATTCAGATAGGGGAAATTGGAC
rJMSF048M23+          CCTGCTCCTGCATGCGTTGTTGTGCAAACGTGGTGCTTATTCAGATAGGGGAAATTGGAC
                      ____________________________________________________________
consensus             CCTGCTCCTGCATGCGTTGTTGTGCAAACGTGGTGCTTATTCAGATAGGGGAAATTGGAC
 
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rJMSF008C24+          AATCAAGATGATATTCAGCTCCAGTCGTCTTCCAGTTGTGAAACATATATGAGGTTAATT
rJMSF020B11+          AATCAAGATGATATTCAGCTCCAGTCGTCTTCCAGTTGTGAAACATATATGAGGTTAATT
rJMFF012H17+          AATCAAGATGATATTCAGCTCCAGTCGTCTTCCAGTTGTGAAACATATATGAGGTTAATT
rJMSF048M23+          AATCAAGATGATATTCAGCTCCAGTCGTCTTCCAGTTGTGAAACATATATGAGGTTAATT
                      ____________________________________________________________
consensus             AATCAAGATGATATTCAGCTCCAGTCGTCTTCCAGTTGTGAAACATATATGAGGTTAATT
 
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rJMSF008C24+          TAGTGATTTTTCCTGCAAGGTGCCGTGACAGCCGACAATACTGGTGTATTGGGTAATTTA
rJMSF020B11+          TAGTGATTTTTCCTGCAAGGTGCCGTGACAGCCGACAATACTGGTGTATTGGGTAATTTA
rJMFF012H17+          TAGTGATTTTTCCTGCAAGGTGCCGTGACAGCCGACAATACTGGTGTATTGGGTAATTTA
rJMSF048M23+          TAGTGATTTTTCCTGCAAGGTGCCGTGACAGCCGACAATACTGGTGTATTGGGTAATTTA
                      ____________________________________________________________
consensus             TAGTGATTTTTCCTGCAAGGTGCCGTGACAGCCGACAATACTGGTGTATTGGGTAATTTA
 
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rJMSF008C24+          TTTTTGAACTTTTTCTTCCTTCATGATGTTCATTTCAGATAAAAGAAGCATTTTGACAAT
rJMSF020B11+          TTTTTGAACTTTTTCTTCCTTCATGATGTTCATTTCAGATAAAAGAAGCATTTTGACAAT
rJMFF012H17+          TTTTTGAACTTTTTCTTCCTTCATGATGTTCATTTCAGATAAAAGAAGCATTTTGACAAT
rJMSF048M23+          TTTTTGAACTTTTTCTTCCTTCATGATGTTCATTTCAGATAAAAGAAGCATTTTGACAAT
                      ____________________________________________________________
consensus             TTTTTGAACTTTTTCTTCCTTCATGATGTTCATTTCAGATAAAAGAAGCATTTTGACAAT
 
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rJMSF008C24+          TGCAAGGGGAAGGGGATGATGGGGATGGGGGTGTAAAGCAGCATTGAGGGTCAGTGACCT
rJMSF020B11+          TGCAAGGGGAAGGGGATGATGGGGATGGGGGTGTAAAGCAGCATTGAGGGTCAGTGACCT
rJMFF012H17+          TGCAAGGGGAAGGGGATGATGGGGATGGGGGTGTAAAGCAGCATTGAGGGTCAGTGACCT
rJMSF048M23+          TGCAAGGGGAAGGGGATGATGGGGATGGGGGTGTAAAGCAGCATTGAGGGTCAGTGACCT
                      ____________________________________________________________
consensus             TGCAAGGGGAAGGGGATGATGGGGATGGGGGTGTAAAGCAGCATTGAGGGTCAGTGACCT
 
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rJMSF008C24+          AAATAGAACAGACTTGTTGGTTGATTTGTCGCTCCTCCTTTGAGGTTTTGTAAGAAGGGT
rJMSF020B11+          AAATAGAACAGACTTGTTGGTTGATTTGTCGCTCCTCCTTTGAGGTTTTGTAAGAAGGGT
rJMFF012H17+          AAATAGAACAGACTTGTTGGTTGATTTGTCGCTCCTCCTTTGAGGTTTTGTAAGAAGGGT
rJMSF048M23+          AAATAGAACAGACTTGTTGGTTGATTTGTCGCTCCTCCTTTGAGGTTTTGTAAGAAGGGT
                      ____________________________________________________________
consensus             AAATAGAACAGACTTGTTGGTTGATTTGTCGCTCCTCCTTTGAGGTTTTGTAAGAAGGGT
 
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rJMSF008C24+          GACCTAGAGAATTGGAGATTCAGAAGAGCATGAAGATCTGGATAGTAAACCATCATCCAG
rJMSF020B11+          GACCTAGAGAATTGGAGATTCAGAAGAGCATGAAGATCTGGATAGTAAACCATCATCCAG
rJMFF012H17+          GACCTAGAGAATTGGAGATTCAGAAGAGCATGAAGATCTGGATAGTAAACCATCATCCAG
rJMSF048M23+          GACCTAGAGAATTGGAGATTCAGAAGAGCATGAAGATCTGGATAGTAAACCATCATCCAG
                      ____________________________________________________________
consensus             GACCTAGAGAATTGGAGATTCAGAAGAGCATGAAGATCTGGATAGTAAACCATCATCCAG
 
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rJMSF008C24+          TATAATTATTCCCTTTTGATAGAAAGAATTGAGCATCTACTTATTTTTCTTCCTGTTAGT
rJMSF020B11+          TATAATTATTCCCTTTTGATAGAAAGAATTGAGCATCTACTTATTTTTCTTCCTGTTAGT
rJMFF012H17+          TATAATTATTCCCTTTTGATAGAAAGAATTGAGCATCTACTTATTTTTCTTCCTGTTAGT
rJMSF048M23+          TATAATTATTCCCTTTTGATAGAAAGAATTGAGCATCTACTTATTTTTCTTCCTGTTAGT
                      ____________________________________________________________
consensus             TATAATTATTCCCTTTTGATAGAAAGAATTGAGCATCTACTTATTTTTCTTCCTGTTAGT
 
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rJMSF008C24+          TTAGACTTTAGACCTGAAGCTGTAGCAGGTCCCCA                         
rJMSF020B11+          TTAGACTTTAGACTTGAAGCTGTAGCAGGTCCCCAGAACATATATCAGTCAGTGATCGAT
rJMFF012H17+          TTAGACTTTAGACTTGAAGCTGTAGCAGGTCCCCAGAACATATATCAGTCAGTGATCGAT
rJMSF048M23+          TTAGACTTTAGACTTGAAGCTGTAGCAGGTCCCCAGAACATATATCAGTCAGTGATCGAT
                      ____________________________________________________________
consensus             TTAGACTTTAGACTTGAAGCTGTAGCAGGTCCCCAGAACATATATCAGTCAGTGATCGAT
 
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rJMSF020B11+          CTATTCTATGCACCTCTCTCTCTT                                    
rJMFF012H17+          CTATTCTATGCACCTCTCTCTCTTTGTAGAACACTGTTT                     
rJMSF048M23+          CTATTCTATGCACCTCTCTCTCTTTGTAGAACACTGTTTATTTCCTTCCTTCAGATGTGT
                      ____________________________________________________________
consensus             CTATTCTATGCACCTCTCTCTCTTTGTAGAACACTGTTTATTTCCTTCCTTCAGATGTGT