Contig 001483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023J05Sequence492001678 (3)722001483 (3)ref|XP_009757584.1|109PREDICTED: transcription factor BIM1 isoform X1 [Nicotiana sylvestris]
JMFN015J14Sequence617001483 (3)ref|XP_009757584.1|116PREDICTED: transcription factor BIM1 isoform X1 [Nicotiana sylvestris]
JMSF047P09Sequence622001678 (3)ref|XP_006345090.1|3e-16PREDICTED: transcription factor BIM1-like isoform X1 [Solanum tuberosum]755001483 (3)ref|XP_009757586.1|118PREDICTED: transcription factor BIM1 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF023J05+                                                         CAAGAAACATAGC
JMFN015J14-                                          TTCCCTCTTTGTGGGACAAGAAACATAGC
rJMSF047P09+                                   AACATATTCCCTCTTTGTGGGACAAGAAACATAGC
                      ____________________________________________________________
consensus                                      AACATATTCCCTCTTTGTGGGACAAGAAACATAGC
 
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rJMFF023J05+          ATCACAACCTCTGCCAAAACTAGTGTCTGGTAAAGACAAATCAACATCACAGCATCAACC
JMFN015J14-           ATCACAACCTCTGCCAAAACTAGTGTCTGGTAAAGACAAATCAACATCACAGCATCAACC
rJMSF047P09+          ATCACAACNTCTGCCAAAACTAGTGTCTGGTAAAGACAAATCAACATCACAGCATCAACC
                      ____________________________________________________________
consensus             ATCACAACCTCTGCCAAAACTAGTGTCTGGTAAAGACAAATCAACATCACAGCATCAACC
 
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rJMFF023J05+          TCAATTTCCTCAGAGTAGATCAAACACATCCAATTACACTGTTGCAAGCAATGAGCCAAA
JMFN015J14-           TCAATTTCCTCAGAGTAGATCAAACACATCCAATTACACTGTTGCAAGCAATGAGCCAAA
rJMSF047P09+          TCAATTTCCTCAGAGTAGATCAAACACATCCAATTACACTGTTGCAAGCAATGAGCCAAA
                      ____________________________________________________________
consensus             TCAATTTCCTCAGAGTAGATCAAACACATCCAATTACACTGTTGCAAGCAATGAGCCAAA
 
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rJMFF023J05+          AGAACAGGACCCAACTATAGAAAGTGGTACAATCAGCATTTCAAGCATCTATTCACAAGG
JMFN015J14-           AGAACAGGACCCAACTATAGAAAGTGGTACAATCAGCATTTCAAGCATCTATTCACAAGG
rJMSF047P09+          AGAACAGGACCCAACTATAGAAAGTGGTACAATCAGCATTTCAAGCATCTATTCACAAGG
                      ____________________________________________________________
consensus             AGAACAGGACCCAACTATAGAAAGTGGTACAATCAGCATTTCAAGCATCTATTCACAAGG
 
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rJMFF023J05+          GTTGTTAAGTACTCTCACAACCGCACTTCAGAGTTCTGGTGTAGATCTTTCGCAAGCCAG
JMFN015J14-           GTTGTTAAGTACTCTCACAACCGCACTTCAGAGTTCTGGTGTAGATCTTTCGCAAGCCAG
rJMSF047P09+          GTTGTTAAGTACTCTCACAACCGCACTTCAGAGTTCTGGTGTAGATCTTTCGCAAGCCAG
                      ____________________________________________________________
consensus             GTTGTTAAGTACTCTCACAACCGCACTTCAGAGTTCTGGTGTAGATCTTTCGCAAGCCAG
 
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rJMFF023J05+          CATCTCAGTACACATTGACCTTGGGAAGAGAGCAAATGGTAGATTAAATTCTTCAGCTTC
JMFN015J14-           CATCTCAGTACACATTGACCTTGGGAAGAGAGCAAATGGTAGATTAAATTCTTCAGCTTC
rJMSF047P09+          CATCTCAGTACACATTGACCTTGGGAAGAGAGCAAATGGTAGATTAAATTCTTCAGCTTC
                      ____________________________________________________________
consensus             CATCTCAGTACACATTGACCTTGGGAAGAGAGCAAATGGTAGATTAAATTCTTCAGCTTC
 
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rJMFF023J05+          CACAATCAAGGGAGACGATGTTTCCACGAGCAATCAACCAATTCCACATTCCATAGTCAC
JMFN015J14-           CACAATCAAGGGAGACGATGTTTCCACGAGCAATCAACCAATTCCACATTCCATAGTCAC
rJMSF047P09+          CACAATCAAGGGAGACGATGTTTCCACGAGCAATCAACCAATTCCACATTCCATAGTCAC
                      ____________________________________________________________
consensus             CACAATCAAGGGAGACGATGTTTCCACGAGCAATCAACCAATTCCACATTCCATAGTCAC
 
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rJMFF023J05+          AAGCGCGGGGGAGGAATCTAGCCAAGCCTTGAAAAGGATAAAAACCAGCTGAAGCTAAGC
JMFN015J14-           AAGCGCGGGGGAGGAATCTAGCCAAGCCTTGAAAAGGATAAAAACCAGCTGAAGCTAAGC
rJMSF047P09+          AAGCGCGGGGGAGGAATCTAGCCAAGCCTTGAAAAGGATAAAAACCAGCTGAAGCTAAGC
                      ____________________________________________________________
consensus             AAGCGCGGGGGAGGAATCTAGCCAAGCCTTGAAAAGGATAAAAACCAGCTGAAGCTAAGC
 
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rJMFF023J05+          TGACAACAAATAGAAGCATTCATTCTGTAATTGATTTATTCATTTTTTTGGGTCTACCTC
JMFN015J14-           TGACAACAAATAGAAGCATTCATTCTGTAATTGATTTATTCATTTTTTTGGGTCTACCTC
rJMSF047P09+          TGACAACAAATAGAAGCATTCATTCTGTAATTGATTTATTCATTTTTTTGGGTCTACCTC
                      ____________________________________________________________
consensus             TGACAACAAATAGAAGCATTCATTCTGTAATTGATTTATTCATTTTTTTGGGTCTACCTC
 
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rJMFF023J05+          TTTTCCTTCATAAGGATGATTCAAGAAATACTGGTAATATATATAGAAATCTACCCAAAC
JMFN015J14-           TTTTCCTTCATAAGGATGATTCAAGAAATACTGGTAATATATATAGAAATCTACCCAAAC
rJMSF047P09+          TTTTCCTTCATAAGGATGATTCAAGAAATACTGGTAATATATATAGAAATCTACCCAAAC
                      ____________________________________________________________
consensus             TTTTCCTTCATAAGGATGATTCAAGAAATACTGGTAATATATATAGAAATCTACCCAAAC
 
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rJMFF023J05+          AACATCACGAACCCACTGTACATGTAATTTATTTCTTTCTTTCTTTATCATTTTGATCTT
JMFN015J14-           AACATCACGAACCCACTGTACATGTAATTTATTTCTTTCTTTCTTTAT            
rJMSF047P09+          AACATCACGAACCCACTGTACATGTAATTTATTTCTTTCTTTCTTTATCATTTTGATCTT
                      ____________________________________________________________
consensus             AACATCACGAACCCACTGTACATGTAATTTATTTCTTTCTTTCTTTATCATTTTGATCTT
 
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rJMFF023J05+          TAGATTGTTGGGCTGCACAGGTTGTCCCTAACAAGTGTGATATTCCTCCTTGAATTATTA
rJMSF047P09+          TAGATTGTTGGGCTGCACAGGTTGTCCCTAACAAGTGTGATATTCCTCCTTGAATTATTA
                      ____________________________________________________________
consensus             TAGATTGTTGGGCTGCACAGGTTGTCCCTAACAAGTGTGATATTCCTCCTTGAATTATTA
 
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rJMFF023J05+          TTACTGTCCTGCCTGTATTCCTACTGAAACTGATTTGAGAAGCCGCGGT           
rJMSF047P09+          TTACTGTCCTGCCTGTATTCCTACTGAAACTGATTTGAGAAGCCGCGGTTTAGCTAAGGC
                      ____________________________________________________________
consensus             TTACTGTCCTGCCTGTATTCCTACTGAAACTGATTTGAGAAGCCGCGGTTTAGCTAAGGC