Contig 001481:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022G16Sequence494012002 (2)ref|XP_004235290.1|5e-26PREDICTED: cell division cycle 20.2, cofactor of APC complex [Solanum lycopersi729001481 (2)ref|XP_006347559.1|5e-115PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Solanum tube
JMSF046M20Sequence632012002 (2)ref|XP_011075818.1|7e-41PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Sesamum indi747001481 (2)ref|XP_009626994.1|4e-114PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Nicotiana to

Alignment

This contig is upended


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rJMSF022G16+                                                 CCAGCAGTTGGCTAGTGGAGG
rJMSF046M20+                                          CTCTGGNCCAGCAGTTGGCTAGTGGAGG
                      ____________________________________________________________
consensus                                             CTCTGGNCCAGCAGTTGGCTAGTGGAGG
 
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rJMSF022G16+          GAATGATAATCTCCTCCACATATGGGACAGATCTACAGCTTCTTCCAACTCCTCAACACA
rJMSF046M20+          GAATGATAATCTCCTCCACATATGGGACAGATCTACAGCTTCTTCCAACTCCTCAACACA
                      ____________________________________________________________
consensus             GAATGATAATCTCCTCCACATATGGGACAGATCTACAGCTTCTTCCAACTCCTCAACACA
 
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rJMSF022G16+          GTGGCTTCACAGGCTTGAGGATCACACAGCTGCTGTTAAGGCGCTTGCTTGGTGTCCATT
rJMSF046M20+          GTGGCTTCACAGGCTTGAGGATCACACAGCTGCTGTTAAGGCGCTTGCTTGGTGTCCATT
                      ____________________________________________________________
consensus             GTGGCTTCACAGGCTTGAGGATCACACAGCTGCTGTTAAGGCGCTTGCTTGGTGTCCATT
 
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rJMSF022G16+          TCAGGGTAACTTGCTGGCCTCCGGTGGAGGTGGAGGCGACAGGTGCATAAAGTTCTGGAA
rJMSF046M20+          TCAGGGTAACTTGCTGGCCTCCGGTGGAGGTGGAGGCGACAGGTGCATAAAGTTCTGGAA
                      ____________________________________________________________
consensus             TCAGGGTAACTTGCTGGCCTCCGGTGGAGGTGGAGGCGACAGGTGCATAAAGTTCTGGAA
 
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rJMSF022G16+          TACCCATACTGGCGCTTGTGTGAATTCAGTTGACACAGGATCACAGGTCTGTGCACTGCT
rJMSF046M20+          TACCCATACTGGCGCTTGTGTGAATTCAGTTGACACAGGATCACAGGTCTGTGCACTGCT
                      ____________________________________________________________
consensus             TACCCATACTGGCGCTTGTGTGAATTCAGTTGACACAGGATCACAGGTCTGTGCACTGCT
 
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rJMSF022G16+          CTGGAACAAGAATGAGCGTGAACTGCTAAGCTCACATGGATTTACTCAGAACCAGCTTAC
rJMSF046M20+          CTGGAACAAGAATGAGCGTGAACTGCTAAGCTCACATGGATTTACTCAGAACCAGCTTAC
                      ____________________________________________________________
consensus             CTGGAACAAGAATGAGCGTGAACTGCTAAGCTCACATGGATTTACTCAGAACCAGCTTAC
 
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rJMSF022G16+          CCTCTGGAAATACCCATCAATGGTAAAGATGGCAGAGCTTACGGGACATACATCCCGAGT
rJMSF046M20+          CCTCTGGAAATACCCATCAATGGTAAAGATGGCAGAGCTTACGGGACATACATCCCGAGT
                      ____________________________________________________________
consensus             CCTCTGGAAATACCCATCAATGGTAAAGATGGCAGAGCTTACGGGACATACATCCCGAGT
 
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rJMSF022G16+          TCTTTTCATGGCTCAGAGTCCAGATGGTTGCACAGTTGCTTCTGCAGCAGGAGATGAAAC
rJMSF046M20+          TCTTTTCATGGCTCAGAGTCCAGATGGTTGCACAGTTGCTTCTGCAGCAGGAGATGAAAC
                      ____________________________________________________________
consensus             TCTTTTCATGGCTCAGAGTCCAGATGGTTGCACAGTTGCTTCTGCAGCAGGAGATGAAAC
 
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rJMSF022G16+          ACTGAGATTCTGGAATGCTTTTGGAACCCCTGAAGTAGCAAAACAGGCACCAAAATCAAA
rJMSF046M20+          ACTGAGATTCTGGAATGCTTTTGGAACCCCTGAAGTAGCAAAACAGGCACCAAAATCAAA
                      ____________________________________________________________
consensus             ACTGAGATTCTGGAATGCTTTTGGAACCCCTGAAGTAGCAAAACAGGCACCAAAATCAAA
 
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rJMSF022G16+          TCCAGAGCCCTTCGCTCATGTCAACCGAATTCGCTGAACAACCACCCACCCCACCCTCTG
rJMSF046M20+          TCCAGAGCCCTTCGCTCATGTCAACCGAATTCGCTGAACAACCACCCACCCCACCCTCTG
                      ____________________________________________________________
consensus             TCCAGAGCCCTTCGCTCATGTCAACCGAATTCGCTGAACAACCACCCACCCCACCCTCTG
 
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rJMSF022G16+          CCCTGAGATATCTCCTTTGCACAAAAAATTTATTTGAGTTCCCTTTTTGTTTTTGGGAAC
rJMSF046M20+          CCCTGAGATATCTCCTTTGCACAAAAAATTTATTTGAGTTCCCTTTTTGTTTTTGGGAAC
                      ____________________________________________________________
consensus             CCCTGAGATATCTCCTTTGCACAAAAAATTTATTTGAGTTCCCTTTTTGTTTTTGGGAAC
 
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rJMSF022G16+          AAACAAGAAAATCTGTTGTTTGAAATGTATCTAATAACTTGTATTTTTGCCTCTTTTTTT
rJMSF046M20+          AAACAAGAAAATCTGTTGTTTGAAATGTATCTAATAACTTGTATTTTTGCCTC-TTTTTT
                      ____________________________________________________________
consensus             AAACAAGAAAATCTGTTGTTTGAAATGTATCTAATAACTTGTATTTTTGCCTCTTTTTTT
 
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rJMSF022G16+          TGGGTACTTTGTTTCATCTGTTGGTCACCTATTGTGACAAATCAC               
rJMSF046M20+          TGGGTACTTTGTTTCATCTGTTGGTCACCTATTGTGACAAATCACCAAAGAATCAGCATA
                      ____________________________________________________________
consensus             TGGGTACTTTGTTTCATCTGTTGGTCACCTATTGTGACAAATCACCAAAGAATCAGCATA